Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00627
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_55763| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)                     30   1.3  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 30   1.7  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061)                  28   7.0  
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               27   9.2  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              27   9.2  
SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)                27   9.2  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         27   9.2  
SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15)                     27   9.2  

>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +1

Query: 7   ERQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEK 135
           ERQT +  S  P+Q N+V  PQ  E P  S T A  LA+P E+
Sbjct: 640 ERQTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDEQ 680


>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
 Frame = +3

Query: 246 EGCANKKKQAKRPLXXXXXXXXFAPPRVPTSAFFPMFFGWGGRAAVVPEAR----PQLPT 413
           +GC +  + A  P          +PP  P  A +  FF +GGR  +V   R     ++ +
Sbjct: 124 DGCTDCNRNA--PSQAATPPLPTSPPSTPFEAVYADFFDFGGRHYLVVGDRLSGWVEVLS 181

Query: 414 HTAQVEEASPQATP----PPT--VDPDRMKNCKP 497
            TA+  +  P A P    PPT   + D + +C P
Sbjct: 182 STAECNQTVPPAEPVAETPPTTQANNDPVSSCMP 215


>SB_55763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 481 IRSGSTVGGGVACGDASSTCAVCV---GNCGRASGTTAALPPHPKNIGKNA 338
           +R G TV   V C DA+   A+C       G + G  A  P H K+   N+
Sbjct: 24  VRDGRTVEHAVVCSDATGLGALCYSWNSQVGDSRGNVAVCPCHQKSCNCNS 74


>SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)
          Length = 197

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 438 TPPRPVLYALATAVGPPGPLRPYLPIRRTLGRTRMWAL 325
           T  + VL      + P  P + YLP RR LG+++ W+L
Sbjct: 14  TVSKGVLGVEQNPLSPSPPNQEYLPKRRELGKSKSWSL 51


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 492 YNFSSGRGPP*AVAWLVATPPRPVLYALATAVGPPGP 382
           Y   SG  PP   A L ATP  P+    AT +  PGP
Sbjct: 480 YIAPSGASPPDGAATLPATPSTPLSPNTATPLTSPGP 516


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 387 PEARPQLPTHTAQVEEASPQATPPPTVDPDRMK 485
           P+   + P  T +     PQ TP PT +P R K
Sbjct: 357 PKHTTEPPRTTPEPTTEPPQTTPEPTTEPSRTK 389


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 312 FAPPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPT 464
           F PP   T++     F +G + AV  ++    PT   Q   A PQ+ PP T
Sbjct: 724 FKPPAPTTTSTAAPTFSFGIKPAVESQSLTA-PTFQFQQASAGPQSQPPST 773


>SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061)
          Length = 425

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 386 DHCGPTSPSEEHWE-ERGCGHSGWCEVIFFLVFLKR 282
           D CG T+ +E  +  ERG  HS   +V++  VF++R
Sbjct: 192 DDCGLTTANESLFTYERGKNHSSHVDVLYRPVFIER 227


>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 1841

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 456 VAWLVATPPRPVL-YA-LATAVG-PPGPLRPYLPIRRTLG 346
           V  +V   PRPV+ YA +   VG  P P++PY P++  +G
Sbjct: 276 VQLVVGMEPRPVVPYAPVQPVVGMEPRPVKPYAPVQPVVG 315


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 330  PTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
            P S     F      A   P ARPQ P      ++ SP   P PT+   +++   P
Sbjct: 866  PASQMNSQFNDQPNLAPYEPFARPQQPPAPMPPQQQSPYQPPAPTMQQPQLQAFAP 921


>SB_30105| Best HMM Match : PLA2_B (HMM E-Value=1.7e-06)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 319 HPECP--HPRSSQCSSDGEVGPQWSRR 393
           HPE P  HPR       G VG +W+RR
Sbjct: 188 HPEWPSIHPRQIVEELRGNVGQKWTRR 214


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -1

Query: 466 TVGGGVA-CGDASSTCAVCVGNCGRASGTTAA 374
           T G G   CG    TC    G CG+  GT  A
Sbjct: 263 TSGKGCGTCGKGCGTCGKGCGTCGKGCGTCGA 294


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 436  ASSTCAVCVGNCGRASGTTAALPPHPKNIGKNAD 335
            A S C+V  GN       T +  PHP  +G+N D
Sbjct: 1137 AWSPCSVTCGNDNETRTRTCS-NPHPSGLGRNCD 1169


>SB_7181| Best HMM Match : C2 (HMM E-Value=1.2e-15)
          Length = 630

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 319 HPECP--HPRSSQCSSDGEVGPQWSRR 393
           HPE P  HPR       G VG +W+RR
Sbjct: 548 HPEWPSIHPRQIVEELRGNVGQKWTRR 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,786,938
Number of Sequences: 59808
Number of extensions: 350466
Number of successful extensions: 1247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)