Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00627
         (619 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB126070-1|BAD20197.1|  278|Homo sapiens keratin associated prot...    31   3.3  
AF072836-1|AAC26860.1|  341|Homo sapiens Sox-like transcriptiona...    30   5.7  
BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.        30   7.5  
AK131444-1|BAD18589.1|  472|Homo sapiens protein ( Homo sapiens ...    30   7.5  
BC069058-1|AAH69058.1| 1130|Homo sapiens proline, glutamic acid ...    29   9.9  
BC010457-1|AAH10457.2| 1048|Homo sapiens PELP1 protein protein.        29   9.9  
BC002875-1|AAH02875.2|  743|Homo sapiens PELP1 protein protein.        29   9.9  
AY882602-1|AAW80659.1| 1061|Homo sapiens transcription factor HM...    29   9.9  
AY190519-1|AAO38848.1| 1692|Homo sapiens Rab3A-interacting molec...    29   9.9  
AL590011-1|CAI16961.1| 1039|Homo sapiens regulating synaptic mem...    29   9.9  
AL445256-1|CAI39598.1| 1039|Homo sapiens regulating synaptic mem...    29   9.9  
AL390056-1|CAI21554.1| 1039|Homo sapiens regulating synaptic mem...    29   9.9  
AL034373-1|CAI20558.1| 1039|Homo sapiens regulating synaptic mem...    29   9.9  
AF547989-1|AAN41255.1| 1130|Homo sapiens MNAR protein.                 29   9.9  
AB051866-1|BAB87242.1| 1470|Homo sapiens RIM long form protein.        29   9.9  
AB045726-1|BAB87121.1| 1028|Homo sapiens RIM short form protein.       29   9.9  
AB002338-1|BAA20798.1| 1053|Homo sapiens KIAA0340 protein.             29   9.9  

>AB126070-1|BAD20197.1|  278|Homo sapiens keratin associated protein
           protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 472 GSTVGG-GVACGDASSTCAVCVGNCGRASGTTAALP 368
           GS+ GG G  CG   S C  C   CG  SG++  +P
Sbjct: 11  GSSCGGCGSGCGGCGSGCGGCGSGCG-GSGSSCCVP 45


>AF072836-1|AAC26860.1|  341|Homo sapiens Sox-like transcriptional
           factor protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -2

Query: 432 PRPVLYALATAVGPPGPLRPYLPIRRTLGRTRMWALWVVRSHLLPRLPQEASSPVSSY*H 253
           PRP   A     G PGP R   P+R          LW    H  PR  +    P  ++ H
Sbjct: 193 PRPAREAHRPHQGNPGPGRQRAPVRSGRAHDAEEKLWARPCHTPPRGREAGGPPFGAWSH 252


>BC031227-1|AAH31227.2|  452|Homo sapiens WDR88 protein protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 318 PPRVPTSAFFPMFFGWGGRAAVVPEARPQLP-TH-TAQVEEASPQATPPPTVDPDR 479
           PP  P S + P    WG  A  +   +  +P TH  A ++  +    PPP + P++
Sbjct: 46  PPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPHLLPEK 101


>AK131444-1|BAD18589.1|  472|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16579 fis, clone TESTI2049956, weakly  similar
           to Vegetatible incompatibility protein HET-E-1. ).
          Length = 472

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 318 PPRVPTSAFFPMFFGWGGRAAVVPEARPQLP-TH-TAQVEEASPQATPPPTVDPDR 479
           PP  P S + P    WG  A  +   +  +P TH  A ++  +    PPP + P++
Sbjct: 20  PPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPHLLPEK 75


>BC069058-1|AAH69058.1| 1130|Homo sapiens proline, glutamic acid and
           leucine rich protein 1 protein.
          Length = 1130

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 APPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEE---ASPQATPPPTVDPD 476
           A P  PT+A   +     G  +V P   P    H A   E    +P  TPPPT+ PD
Sbjct: 698 ARPGPPTTANH-LGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPD 753


>BC010457-1|AAH10457.2| 1048|Homo sapiens PELP1 protein protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 APPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEE---ASPQATPPPTVDPD 476
           A P  PT+A   +     G  +V P   P    H A   E    +P  TPPPT+ PD
Sbjct: 616 ARPGPPTTANH-LGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPD 671


>BC002875-1|AAH02875.2|  743|Homo sapiens PELP1 protein protein.
          Length = 743

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 APPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEE---ASPQATPPPTVDPD 476
           A P  PT+A   +     G  +V P   P    H A   E    +P  TPPPT+ PD
Sbjct: 311 ARPGPPTTANH-LGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPD 366


>AY882602-1|AAW80659.1| 1061|Homo sapiens transcription factor HMX3
           protein.
          Length = 1061

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 APPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEE---ASPQATPPPTVDPD 476
           A P  PT+A   +     G  +V P   P    H A   E    +P  TPPPT+ PD
Sbjct: 629 ARPGPPTTANH-LGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPD 684


>AY190519-1|AAO38848.1| 1692|Homo sapiens Rab3A-interacting molecule
           protein.
          Length = 1692

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AL590011-1|CAI16961.1| 1039|Homo sapiens regulating synaptic
           membrane exocytosis 1 protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AL445256-1|CAI39598.1| 1039|Homo sapiens regulating synaptic
           membrane exocytosis 1 protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AL390056-1|CAI21554.1| 1039|Homo sapiens regulating synaptic
           membrane exocytosis 1 protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AL034373-1|CAI20558.1| 1039|Homo sapiens regulating synaptic
           membrane exocytosis 1 protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AF547989-1|AAN41255.1| 1130|Homo sapiens MNAR protein.
          Length = 1130

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 APPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEE---ASPQATPPPTVDPD 476
           A P  PT+A   +     G  +V P   P    H A   E    +P  TPPPT+ PD
Sbjct: 698 ARPGPPTTANH-LGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPD 753


>AB051866-1|BAB87242.1| 1470|Homo sapiens RIM long form protein.
          Length = 1470

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AB045726-1|BAB87121.1| 1028|Homo sapiens RIM short form protein.
          Length = 1028

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 209 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 247


>AB002338-1|BAA20798.1| 1053|Homo sapiens KIAA0340 protein.
          Length = 1053

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 RAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A +   +R Q P  TA    AS Q   PP+  PDR K  +P
Sbjct: 234 KARLQERSRSQTPLSTAA---ASSQDAAPPSAPPDRSKGAEP 272


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,091,069
Number of Sequences: 237096
Number of extensions: 2020078
Number of successful extensions: 8045
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8021
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)