Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00627
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    29   2.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   4.6  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   4.6  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   6.1  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -1

Query: 472 GSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIGKNADVGTLGG 317
           G   GGG  CG     C    G CG   G      P P         G  GG
Sbjct: 76  GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGG 127



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -1

Query: 487 FFIRSGSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIGKNADVGTLGG 317
           F   SG   GGG  CG        C G  G   G     PP     G     G  GG
Sbjct: 18  FLFPSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGG 74


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -1

Query: 478 RSGSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIGKNADVGTLG 320
           ++G T GGG   G  +S+   C G C       A  P  P   GK    G  G
Sbjct: 81  QAGYTSGGGADAGAGASSGGQCEGCCNPGPPGVAGNPGKPGKPGKPGAPGNPG 133


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -1

Query: 472 GSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIG 347
           G   GGG  C      C  C G CG       +LP  P  +G
Sbjct: 37  GGGCGGGCGCAPPPPPC--CGGGCGGCGRKKRSLPEKPTFVG 76


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 34   YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 141
            YVPQ+      P  PE    +P+Q   + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 360 GWGGRAAVVPEARPQLPTHTAQVEEASPQATP 455
           G+ G +   PEA P  P+      EA+P+A P
Sbjct: 467 GYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 360 GWGGRAAVVPEARPQLPTHTAQVEEASPQATP 455
           G+ G +   PEA P  P+      EA+P+A P
Sbjct: 467 GYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 372 RAAVVPEARPQ-LPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           +A  +P+  P+ LPT   Q++ + P   P P  D   M +C P
Sbjct: 230 QANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPSCSP 272


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 387 PEARPQLPTHTAQVEEASPQATPPP 461
           P   P L T T  +E+  P  TPPP
Sbjct: 191 PSEPPLLTTPTTPIEDPEPYVTPPP 215


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 40  PQQENEVYYPQQPENPIFSPTQATELA 120
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 327 VPTSAF-FPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPP 461
           V TS F FPM  G GG     P A    P        A P   PPP
Sbjct: 13  VSTSGFLFPMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPPPPP 58


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 399 PQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP*T 503
           PQ+P    Q  + +P+ T PPT  P    N  P T
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRT 796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,945
Number of Sequences: 27780
Number of extensions: 269681
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)