Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00627
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   0.61 
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    31   0.81 
At1g07120.1 68414.m00757 expressed protein                             31   0.81 
At4g18400.1 68417.m02731 expressed protein                             29   3.3  
At3g28840.1 68416.m03598 expressed protein                             29   3.3  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    29   3.3  
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon...    28   4.3  
At5g54440.1 68418.m06780 expressed protein                             27   7.5  
At5g18510.1 68418.m02185 hypothetical protein                          27   7.5  
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)...    27   7.5  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    27   7.5  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    27   7.5  
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    27   7.5  
At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    27   10.0 
At5g01790.1 68418.m00098 expressed protein                             27   10.0 
At4g26570.2 68417.m03831 calcineurin B-like protein 3 (CBL3) ide...    27   10.0 

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 318 PPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPP 461
           PPRVP     P   G GG++  +P ARP LP          P   PPP
Sbjct: 648 PPRVPRPP--PRSAG-GGKSTNLPSARPPLPGGGPPPPPPPPGGGPPP 692


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 387 PEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
           P A P+LPTH+A      P A PPP +   R  +  P
Sbjct: 757 PPAPPRLPTHSA--SPPPPTAPPPPPLGQTRAPSAPP 791


>At1g07120.1 68414.m00757 expressed protein
          Length = 392

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 432 PRPVLYALATAVGPPGPLRPYLPIRRTLGR 343
           P+P +   +TA  PP P  P LP +RTLG+
Sbjct: 98  PKPTIQGQSTATKPPPP--PPLPSKRTLGK 125


>At4g18400.1 68417.m02731 expressed protein
          Length = 107

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 399 PQLPTHTAQVEEASPQ-ATPPPTVDPDRM 482
           P  P  ++Q E   P+ +TPP T DP RM
Sbjct: 15  PSPPESSSQPEHPPPETSTPPATFDPSRM 43


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 472 GSTVGGGVACGDASSTCAVCVGNCGRASGTTAA 374
           G+T GG  A G  ++       + G A+GTTA+
Sbjct: 259 GATAGGATASGAGTAAGGTTASDAGTAAGTTAS 291


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 381 VVPEARPQLPTHTAQVEEASPQATPPPTV 467
           V P  RP  PTH   V +  P A PPPTV
Sbjct: 822 VAPPVRPMTPTHQVAV-QPEPVA-PPPTV 848


>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
           family protein / Gpi1 family protein similar to
           SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
           biosynthetic protein gpi1 {Schizosaccharomyces pombe};
           contains Pfam profile PF05024: N-acetylglucosaminyl
           transferase component (Gpi1)
          Length = 560

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 59  SITLSNQRTRSSAPLKRPNWLTPL 130
           S++ SN   ++ APLK+P W+  L
Sbjct: 49  SLSFSNSSPQTKAPLKKPKWVDDL 72


>At5g54440.1 68418.m06780 expressed protein
          Length = 829

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 330 PTSAFFPMFFGWGGRAAVV 386
           PTS FFP+    G RAAVV
Sbjct: 610 PTSTFFPLVVSPGSRAAVV 628


>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 82  NPIFSPTQATELADPTEKIE 141
           +P+FSP + +E+ D  EK+E
Sbjct: 137 SPVFSPLECSEMRDSAEKLE 156


>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain ;similar to anther-specific myb-related protein 2
           GI:11066263 from [Nicotiana tabacum]
          Length = 389

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 1   RHERQTLA--DTSYVPQQENEVYYPQQPENPIFSPTQATELADP 126
           R +RQ L      Y      +  YPQQP +P+ S T A+    P
Sbjct: 121 RFQRQGLPLYPPEYSQNNHQQQMYPQQPSSPLPSQTPASSFTFP 164


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
            protein contains similarity to ec31p [Oryza sativa]
            gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
            WD domain, G-beta repeat
          Length = 1102

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 321  PRVPTSAFFPMFFGWGGRAAVVPEA-RPQLP-THTAQVEEASPQATPPPTV 467
            P+V   A  P+ F       V P + +P  P T  A  + A   ATPPPTV
Sbjct: 933  PQVVAPAAGPIGFTPMATPGVAPRSVQPASPPTQQAAAQAAPAPATPPPTV 983


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
            protein contains similarity to ec31p [Oryza sativa]
            gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
            WD domain, G-beta repeat
          Length = 1104

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 321  PRVPTSAFFPMFFGWGGRAAVVPEA-RPQLP-THTAQVEEASPQATPPPTV 467
            P+V   A  P+ F       V P + +P  P T  A  + A   ATPPPTV
Sbjct: 935  PQVVAPAAGPIGFTPMATPGVAPRSVQPASPPTQQAAAQAAPAPATPPPTV 985


>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +3

Query: 318 PPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPTV 467
           PP+    A    F G G         +PQ P       +  P   PPP+V
Sbjct: 91  PPKPNVQAHMSSFQGGGSVHEPANTMQPQAPIRKHPTPQPMPMPPPPPSV 140


>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 387 PEARPQLPTHTAQVEEASPQATPPP 461
           P  RPQ P  T   EE  PQ  PPP
Sbjct: 91  PPPRPQTPP-TFVPEETQPQTPPPP 114


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 336 SAFFPMF--FGWGGRAAVVP---EARPQLPTHTAQVEEASPQATPPPT 464
           SA  P F  + + G A  VP   E+ P  P H +      P  TPPP+
Sbjct: 37  SAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPS 84


>At4g26570.2 68417.m03831 calcineurin B-like protein 3 (CBL3)
           identical to calcineurin B-like protein 3 (GI:22136404)
           [Arabidopsis thaliana]
          Length = 230

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 237 GLLNFEYFRLW*FRSGRRFGSLGNRYQSGGVQFDLF 130
           GL+N E F+L  F++ ++     +RYQS    FDLF
Sbjct: 65  GLINKEEFQLALFKTNKKESLFADRYQS--QVFDLF 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,470
Number of Sequences: 28952
Number of extensions: 259445
Number of successful extensions: 1010
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)