Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00626
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 137 7e-33
03_01_0547 + 4093196-4093657,4094267-4095148 137 7e-33
03_01_0544 + 4082528-4082989,4083585-4084466 137 7e-33
03_01_0543 + 4076981-4077442,4078145-4079026 137 7e-33
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 46 3e-05
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 44 1e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 44 1e-04
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 44 2e-04
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.008
02_03_0380 + 18335903-18337837 29 3.8
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 29 5.1
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 28 8.8
07_03_0634 + 20125242-20125688 28 8.8
04_03_0739 + 19180048-19182039 28 8.8
04_03_0737 - 19152942-19154930 28 8.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 8.8
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 137 bits (332), Expect = 7e-33
Identities = 59/82 (71%), Positives = 73/82 (89%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHTAHIACKFAEIKEKVDR 253
VLDCHT+HIA KFAE+ K+DR
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDR 369
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 137 bits (332), Expect = 7e-33
Identities = 59/82 (71%), Positives = 73/82 (89%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHTAHIACKFAEIKEKVDR 253
VLDCHT+HIA KFAE+ K+DR
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDR 369
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 137 bits (332), Expect = 7e-33
Identities = 59/82 (71%), Positives = 73/82 (89%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHTAHIACKFAEIKEKVDR 253
VLDCHT+HIA KFAE+ K+DR
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDR 369
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 137 bits (332), Expect = 7e-33
Identities = 59/82 (71%), Positives = 73/82 (89%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHTAHIACKFAEIKEKVDR 253
VLDCHT+HIA KFAE+ K+DR
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDR 369
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 371 SGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
TGK+++ P+ + S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 592 TGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 259 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 423
GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 617 GKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 259 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 423
GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 617 GKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGY 181
R A PG+NV + + ++ G+V K NP ++F AQ+ +L + GY
Sbjct: 235 RSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELLDNAIFTAGY 293
Query: 182 TPVLDCHTAHIACKFAEIKEKVD 250
VL H+ C+ E+ E++D
Sbjct: 294 KAVLHIHSVVEECEIVELIEEID 316
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 220 QICRNQRKS*PSTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 390
+I ++K K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 359 EIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>02_03_0380 + 18335903-18337837
Length = 644
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 386 TAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVDGQLFL 237
T KRPR W S G G L AA + + G+T VD+ DG +
Sbjct: 471 TYKRPR---QWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLM 517
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = +2
Query: 128 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLEMQ 307
F + + +HP + PV+ HT + KFA+ + + + +T PSS
Sbjct: 67 FLPRNLQTSHPAKAPPASLPVI--HTVYHYAKFAKYYSEEEAV------TTAMPSSSSPD 118
Query: 308 PLSTWYLPSLYV*SPSRNSHPSVVLL 385
L W+LP V S +VV+L
Sbjct: 119 VLYLWHLPDPKVCGDSHGKSQTVVVL 144
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 72 VVVMLLVTPKTTHLRVLQILQLKSLCLTILVKSQTVTHQYWIATLPTLPANLQKSKKKLT 251
+VV+L+VT ++ L +LC +LV QT+ + +A L L S + +T
Sbjct: 225 LVVVLMVTISRLRFPIVTKLADSALCRKLLVWGQTIQNMCMLAALVMLVLTTDGSFRFVT 284
Query: 252 V 254
+
Sbjct: 285 I 285
>07_03_0634 + 20125242-20125688
Length = 148
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Frame = -1
Query: 506 SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLE 327
S++ + A ++A T PP ++LT + L R P G WK +E
Sbjct: 45 SAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVKWKGRREHFVE 104
Query: 326 ---GTKLTMAASPDLMDFGLTSVDLP 258
GT P+ G +V LP
Sbjct: 105 RLVGTAHLPRRRPERQPQGSGAVPLP 130
>04_03_0739 + 19180048-19182039
Length = 663
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 386 TAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVDGQLFL 237
T +RPR W S G G L AA + + G T VD+ DG L +
Sbjct: 488 TYRRPR---QWLSSAGLGAMGFGLPAAAGAAVANPGATVVDIDGDGSLLM 534
>04_03_0737 - 19152942-19154930
Length = 662
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 386 TAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVDGQLFL 237
T +RPR W S G G L AA + + G T VD+ DG L +
Sbjct: 488 TFRRPR---QWLSSAGLGAMGFGLPAAAGAAVANPGATVVDIDGDGSLLM 534
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 473 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 297
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 296 DLMDFGLTSVD 264
L LT ++
Sbjct: 326 ALSPIALTCME 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,271,384
Number of Sequences: 37544
Number of extensions: 397601
Number of successful extensions: 1113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -