Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00626
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 6e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical p... 30 2.0
Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 6.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (349), Expect = 6e-35
Identities = 65/81 (80%), Positives = 71/81 (87%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPV
Sbjct: 267 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 326
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHTAHIACKF E+KEKVDR
Sbjct: 327 LDCHTAHIACKFNELKEKVDR 347
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 349 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 144 bits (349), Expect = 6e-35
Identities = 65/81 (80%), Positives = 71/81 (87%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHTAHIACKF E+KEKVDR
Sbjct: 361 LDCHTAHIACKFNELKEKVDR 381
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 383 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 144 bits (349), Expect = 6e-35
Identities = 65/81 (80%), Positives = 71/81 (87%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHTAHIACKF E+KEKVDR
Sbjct: 361 LDCHTAHIACKFNELKEKVDR 381
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
TGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 383 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 283 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 432
K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 481 KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +2
Query: 5 TREAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYT 184
T V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 391 TERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYS 449
Query: 185 PVLDCHTA 208
VL +A
Sbjct: 450 CVLHIQSA 457
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 253 STGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
S G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 529 SNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 253 STGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
S G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 SNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical
protein F25H5.3d protein.
Length = 558
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 161 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLEMQPLSTWYLPSLY 340
G+ + G PV H CK AE RL LL++TQ P+ + + ++
Sbjct: 390 GETAKGEYPVDALKIMHYICKEAEAAVYHRRLFDELLQNTQKPTDMS-------HTIAIA 442
Query: 341 V*SPSRNSHPSVVLLSVT*G 400
S + + H S +LL T G
Sbjct: 443 ATSAAASCHASAILLITTTG 462
>Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical
protein F25H5.3c protein.
Length = 531
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 161 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLEMQPLSTWYLPSLY 340
G+ + G PV H CK AE RL LL++TQ P+ + + ++
Sbjct: 363 GETAKGEYPVDALKIMHYICKEAEAAVYHRRLFDELLQNTQKPTDMS-------HTIAIA 415
Query: 341 V*SPSRNSHPSVVLLSVT*G 400
S + + H S +LL T G
Sbjct: 416 ATSAAASCHASAILLITTTG 435
>Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical
protein F25H5.3b protein.
Length = 600
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 161 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLEMQPLSTWYLPSLY 340
G+ + G PV H CK AE RL LL++TQ P+ + + ++
Sbjct: 432 GETAKGEYPVDALKIMHYICKEAEAAVYHRRLFDELLQNTQKPTDMS-------HTIAIA 484
Query: 341 V*SPSRNSHPSVVLLSVT*G 400
S + + H S +LL T G
Sbjct: 485 ATSAAASCHASAILLITTTG 504
>Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical
protein F25H5.3a protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 161 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLEMQPLSTWYLPSLY 340
G+ + G PV H CK AE RL LL++TQ P+ + + ++
Sbjct: 394 GETAKGEYPVDALKIMHYICKEAEAAVYHRRLFDELLQNTQKPTDMS-------HTIAIA 446
Query: 341 V*SPSRNSHPSVVLLSVT*G 400
S + + H S +LL T G
Sbjct: 447 ATSAAASCHASAILLITTTG 466
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 494 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 342
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 178 LHTSIGLPHCPHCLQICRNQRKS*PSTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 357
LH++ LP L + +N+ K P T + + ++ DA N+VP L V+ +Q
Sbjct: 2913 LHSN--LPISLFILPMIQNKMKQKPGTDQEAAWQTEILEKLDAKSHNIVPPSILLVKCYQ 2970
Query: 358 EFPPL 372
E L
Sbjct: 2971 ELQQL 2975
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 178 LHTSIGLPHCPHCLQICRNQRKS*PSTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 357
LH++ LP L + +N+ K P T + + ++ DA N+VP L V+ +Q
Sbjct: 2922 LHSN--LPISLFILPMIQNKMKQKPGTDQEAAWQTEILEKLDAKSHNIVPPSILLVKCYQ 2979
Query: 358 EFPPL 372
E L
Sbjct: 2980 ELQQL 2984
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 141 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 10
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,577
Number of Sequences: 27780
Number of extensions: 351863
Number of successful extensions: 971
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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