Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00626
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   176   2e-46
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   170   1e-44
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   170   1e-44
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    69   6e-14
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   3.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  176 bits (429), Expect = 2e-46
 Identities = 83/98 (84%), Positives = 89/98 (90%)
 Frame = +2

Query: 8   REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 187
           +EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP
Sbjct: 300 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 359

Query: 188 VLDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLE 301
           VLDCHTAHIACKFA+IKEK DR   N   + +NP S++
Sbjct: 360 VLDCHTAHIACKFADIKEKCDRR--NGKTTEENPKSIK 395



 Score =  112 bits (270), Expect = 3e-27
 Identities = 53/60 (88%), Positives = 56/60 (93%)
 Frame = +1

Query: 259 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 438
           GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 384 GKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  170 bits (414), Expect = 1e-44
 Identities = 79/97 (81%), Positives = 86/97 (88%)
 Frame = +2

Query: 11  EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
           EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPV
Sbjct: 301 EALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPV 360

Query: 191 LDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLE 301
           LDCHTAHIACKFAEIKEK DR       + +NP S++
Sbjct: 361 LDCHTAHIACKFAEIKEKCDRRTGK--TTEENPKSIK 395



 Score =  111 bits (267), Expect = 7e-27
 Identities = 52/61 (85%), Positives = 57/61 (93%)
 Frame = +1

Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
           TGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V 
Sbjct: 383 TGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVT 442

Query: 436 F 438
           F
Sbjct: 443 F 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  170 bits (414), Expect = 1e-44
 Identities = 79/97 (81%), Positives = 86/97 (88%)
 Frame = +2

Query: 11  EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
           EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPV
Sbjct: 12  EALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPV 71

Query: 191 LDCHTAHIACKFAEIKEKVDRLLVNLLKSTQNPSSLE 301
           LDCHTAHIACKFAEIKEK DR       + +NP S++
Sbjct: 72  LDCHTAHIACKFAEIKEKCDRRTGK--TTEENPKSIK 106



 Score = 44.8 bits (101), Expect = 9e-07
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +1

Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSK 333
           TGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 94  TGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 68.5 bits (160), Expect = 6e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 8   REAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 103
           +EAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 243 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 589 EFCSPFFLRNTFR*MKYRSCMKN 521
           E C  FF R+  + ++YR C KN
Sbjct: 85  EGCKGFFRRSIQQKIQYRPCTKN 107


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 56  SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 163
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 682 ITKVSDILCITLYKL 638
           I KV DI+C  +YK+
Sbjct: 116 IMKVDDIICTRVYKI 130


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 624 VTLFYNLYKVIHNISETFVMTAN 692
           V  +Y  YK  H+ISE    T+N
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSN 458


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 624 VTLFYNLYKVIHNISETFVMTAN 692
           V  +Y  YK  H+ISE    T+N
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSN 458


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 175 RLHTSIGLPHCPHC 216
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 201 TLPTLPANLQKSKKK 245
           TLP+LP+ L K+ K+
Sbjct: 674 TLPSLPSTLTKNSKQ 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,744
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)