Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00626
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 140 9e-34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 140 9e-34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 140 9e-34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 140 9e-34
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 83 2e-16
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 46 2e-05
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 45 5e-05
At4g27900.2 68417.m04005 expressed protein 32 0.45
At4g27900.1 68417.m04004 expressed protein 32 0.45
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 30 1.4
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 29 2.4
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 28 5.6
At5g56440.1 68418.m07045 F-box family protein contains F-box dom... 28 7.4
At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containi... 27 9.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 140 bits (339), Expect = 9e-34
Identities = 60/81 (74%), Positives = 74/81 (91%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PV
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPV 348
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHT+HIA KF+EI K+DR
Sbjct: 349 LDCHTSHIAVKFSEILTKIDR 369
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (339), Expect = 9e-34
Identities = 60/81 (74%), Positives = 74/81 (91%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PV
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPV 348
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHT+HIA KF+EI K+DR
Sbjct: 349 LDCHTSHIAVKFSEILTKIDR 369
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (339), Expect = 9e-34
Identities = 60/81 (74%), Positives = 74/81 (91%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PV
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPV 348
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHT+HIA KF+EI K+DR
Sbjct: 349 LDCHTSHIAVKFSEILTKIDR 369
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (339), Expect = 9e-34
Identities = 60/81 (74%), Positives = 74/81 (91%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PV
Sbjct: 289 EALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPV 348
Query: 191 LDCHTAHIACKFAEIKEKVDR 253
LDCHT+HIA KF+EI K+DR
Sbjct: 349 LDCHTSHIAVKFSEILTKIDR 369
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 371 SGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/59 (59%), Positives = 47/59 (79%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 432
TG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 37 TGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
Score = 61.7 bits (143), Expect = 5e-10
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2
Query: 149 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 250
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKID 34
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +1
Query: 250 PSTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKA 429
P TG+ T+ +P+ + + +A++ + P+CVE+F E LGR +R +TVA+G +
Sbjct: 603 PKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTR 662
Query: 430 V 432
+
Sbjct: 663 I 663
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 289 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 423
+K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGY 181
+ A PG+N+ + + +++ G+V S NP +F AQ+ +L + GY
Sbjct: 383 KRAGPGENLRVRITGIEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGY 441
Query: 182 TPVLDCHTAHIACKFAEIKEKVD 250
+L H C+ E+K ++D
Sbjct: 442 KAILHIHAVVEECEIIELKSQID 464
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 280 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 372
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 280 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 372
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQIS---NGY 181
EA+ GDNVG ++ + +++RG V + P + V+ G+ S GY
Sbjct: 345 EALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGY 404
Query: 182 TPVLDCHTAHIACKFAEIKEKVD 250
P T + K +I D
Sbjct: 405 RPQFYMRTTDVTGKVTKIMNDKD 427
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 477 KGHQGQEVARALTAQFFIQLRYFIHRKVFRRKKGL---QNSFLFYIFYKACNVTLFYNL 644
+GH G EV + A +F QLR R + + + + YI C T+FY++
Sbjct: 344 EGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDV 402
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 28.3 bits (60), Expect = 5.6
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +2
Query: 23 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL------NHPGQISNGYT 184
GDNVG ++ + ++++RG V +K K F A++ VL H SN Y
Sbjct: 332 GDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSN-YR 388
Query: 185 PVLDCHTAHIACKFAEIKEKVDRLL 259
P TA I K E+ E V ++
Sbjct: 389 PQFYLRTADITGK-VELPENVKMVM 412
>At5g56440.1 68418.m07045 F-box family protein contains F-box domain
Pfam:PF00646
Length = 430
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 8 REAVPGDNVGFNVKNVSVKEL 70
R VPGD+VGF +K S+K L
Sbjct: 210 RSQVPGDDVGFVIKAPSLKSL 230
>At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 651
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 561 FRRKKGLQNSFLFYIFYKACNVTLFYNLYKVIHNI 665
FRR G NS F F AC+ L NL +H +
Sbjct: 200 FRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGL 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,290
Number of Sequences: 28952
Number of extensions: 318936
Number of successful extensions: 880
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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