Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00624
(728 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 100 7e-20
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 81 2e-14
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;... 71 4e-11
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 71 4e-11
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p... 71 4e-11
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 69 1e-10
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 67 5e-10
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 64 3e-09
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350... 64 3e-09
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 62 1e-08
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 61 3e-08
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 60 4e-08
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 60 5e-08
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 59 1e-07
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 55 2e-06
UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 51 3e-05
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 50 4e-05
UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 44 0.005
UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core p... 43 0.009
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 40 0.082
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 36 1.0
UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_Q1KVX9 Cluster: Cell division protein; n=1; Scenedesmus... 36 1.3
UniRef50_A1ZIV0 Cluster: Serine/threonine protein kinases, putat... 35 1.8
UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Re... 35 2.3
UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:... 33 5.4
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 33 5.4
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 33 5.4
UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7... 33 7.2
UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putati... 33 7.2
UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 33 9.5
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 99.5 bits (237), Expect = 7e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 48
Score = 85.0 bits (201), Expect = 2e-15
Identities = 44/55 (80%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 410
TYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 49 TYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 81.4 bits (192), Expect = 2e-14
Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 2/48 (4%)
Frame = +1
Query: 115 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM--TLVT 252
S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+ T+VT
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVT 50
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 371
T+RDGR QL+NV+IRG+KIRF+ILPDMLKNAPMFK G
Sbjct: 50 TFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88
>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 111
Score = 70.5 bits (165), Expect = 4e-11
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
M+IG P+K+ HE++G +VT E TGE YRG+++E EDNMNCQ+ VT+
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTI 48
Score = 44.4 bits (100), Expect = 0.003
Identities = 16/36 (44%), Positives = 28/36 (77%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 362
T +DG ++ E ++IRG+++RF++LP+M KN+P K
Sbjct: 49 TAKDGSQSRTEYIFIRGNQVRFVVLPEMFKNSPCLK 84
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 70.5 bits (165), Expect = 4e-11
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +1
Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+ +T
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDIT 49
Score = 35.5 bits (78), Expect(2) = 7e-05
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIR 317
T +DG+V+QLE+V+IRGSK+R
Sbjct: 51 TAKDGKVSQLEHVFIRGSKVR 71
Score = 33.9 bits (74), Expect(2) = 7e-05
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +3
Query: 315 RFLILPDMLKNAPMFKR 365
RF+++PD+LK+APMFKR
Sbjct: 102 RFMVIPDILKHAPMFKR 118
>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
putative; n=12; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmD3, putative - Aspergillus clavatus
Length = 136
Score = 70.5 bits (165), Expect = 4e-11
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 115 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
+IG+PIK+L+EA+GHVVT E +G VYRGKL+EAEDNMN Q+ +TV
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITV 53
Score = 46.4 bits (105), Expect = 7e-04
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLK 344
T RDGRV+ L+ VYIRGS ++F I+PDML+
Sbjct: 54 TARDGRVSHLDQVYIRGSHVKFFIVPDMLR 83
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
Eukaryota|Rep: Pre-mRNA splicing factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSA 404
T RDGRV+QLE VYIRGS IRF+I+PD+L APMFKR G GRG A
Sbjct: 50 TARDGRVSQLEQVYIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGRGIGA 99
Score = 65.7 bits (153), Expect = 1e-09
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +1
Query: 115 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
++GVP+K+LHE+ GH++T E TGE+YRGKL+EAED +N + +TV
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITV 49
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 66.9 bits (156), Expect = 5e-10
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = +1
Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
++ S+G+P+K+LHEA GHVV E +GE+YRG +IE +DN NCQ+ +T
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENIT 49
Score = 62.5 bits (145), Expect = 1e-08
Identities = 25/37 (67%), Positives = 34/37 (91%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
T +DG+V+QLE+V+IRG K+RF+++PDM KNAPMFKR
Sbjct: 51 TVKDGKVSQLEHVFIRGIKVRFMVIPDMRKNAPMFKR 87
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 64.5 bits (150), Expect = 3e-09
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = +1
Query: 103 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
++NM+IG+P+K+L+E GH+VT E +G++YRG L EDNMNC +
Sbjct: 20 HINMTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCML 65
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +3
Query: 249 NSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN 374
N+T RDG+ LE Y+RGS+IRF ILPDMLKNAPMFK N
Sbjct: 69 NATMRDGKPVSLEQCYLRGSQIRFCILPDMLKNAPMFKLAAN 110
>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY03502;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03502 - Plasmodium yoelii yoelii
Length = 215
Score = 64.1 bits (149), Expect = 3e-09
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VTV
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTV 48
Score = 41.1 bits (92), Expect = 0.027
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 282 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 377
L+ VYIRG + F+I PDML+ AP+FK +K
Sbjct: 114 LQQVYIRGGSVSFMIFPDMLRYAPIFKVNKSK 145
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 62.5 bits (145), Expect = 1e-08
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +1
Query: 115 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
S+G+P+K+LHE GH +T ET TG +YRG L AEDNMN + VTV
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTV 52
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 362
T++DG+V LE VYIRGS+++ +I PDML++APMFK
Sbjct: 53 THKDGKVLSLEQVYIRGSQVQMVIFPDMLRHAPMFK 88
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 60.9 bits (141), Expect = 3e-08
Identities = 23/40 (57%), Positives = 34/40 (85%)
Frame = +1
Query: 121 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
G+P+K+L+EA+GH+V+ E TG YRGKL+E+ED+MN Q+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQL 44
Score = 54.0 bits (124), Expect = 4e-06
Identities = 18/43 (41%), Positives = 34/43 (79%)
Frame = +3
Query: 252 STYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 380
+T G V ++ +++RGS+I+F+++PD+LKNAP+FK+ ++P
Sbjct: 49 ATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFKKNSSRP 91
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVHTE 264
MS G+PIK+LHEA VV NTG+ YRG L EDNMNC +T V VHT+
Sbjct: 1 MSNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNV-VHTQ 50
Score = 39.1 bits (87), Expect = 0.11
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 362
T +DG+ + + Y+RGS I + LP+ML NA +FK
Sbjct: 49 TQKDGQQIKFDKTYVRGSNILYFDLPEMLLNARLFK 84
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 60.1 bits (139), Expect = 5e-08
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVHT--------EM 267
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + T E
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 268 AELHSSRMCTSVVPRSDF*YYRTC*RTRQCSKDKGINLLQDEGR-VRYCEPKLLVEDEQV 444
L S++ V+P F Y + R +K K + ++++ R VR E V +
Sbjct: 61 VYLRGSQIRFVVIP-DVFKYAPMFKKIRANAKSKNMQQIREKARQVRGMEFTSFVNN--- 116
Query: 445 EEVGATVEAG 474
VGA+ + G
Sbjct: 117 RGVGASYQVG 126
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVHT--------EM 267
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + T E
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQ 60
Query: 268 AELHSSRMCTSVVPRSDF*YYRTC*RTRQCSKDKGINLLQDEGR 399
L S++ V+P F Y + R +K K + ++++ R
Sbjct: 61 VYLRGSQIRFVVIP-DVFKYAPMFKKIRANAKSKNMQQIREKAR 103
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon cuniculi|Rep:
Similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 -
Encephalitozoon cuniculi
Length = 87
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/55 (41%), Positives = 40/55 (72%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVHTEMAEL 276
M++ VP+K+LHE++G +VT ET++G++YRG++ E +D MN + V V + + L
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSL 55
Score = 33.5 bits (73), Expect = 5.4
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 285 ENVYIRGSKIRFLILPDMLKNAPMF 359
+ V IRGS IRF +LP LK AP F
Sbjct: 58 KEVLIRGSSIRFFVLPPALKFAPFF 82
>UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=4; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
chabaudi
Length = 129
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 13/61 (21%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLI-------------EAEDNMNCQMTLVT 252
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VT
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 261 RDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 377
+DG+ LE VYIRG + F+I PDML+ AP+FK +K
Sbjct: 64 QDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSK 102
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1
Query: 130 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
I +LHEA+G VVT ET GE+YRG L +ED MN ++ VT
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVT 52
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 285 ENVYIRGSKIRFLILPDMLKNAPMF 359
+ VYIRGS I F +LPDM NAPMF
Sbjct: 64 DKVYIRGSNIVFFVLPDMFANAPMF 88
>UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 80
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKN 347
T RDGRV+ LE VYIRGS +R+ I+PDML++
Sbjct: 11 TARDGRVSHLEQVYIRGSHVRYFIVPDMLRS 41
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein Sm D3 - Guillardia theta (Cryptomonas
phi)
Length = 79
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 136 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNC 234
+L E++ +V+T E G +YRGKLI E+NMNC
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNC 41
>UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core
protein required for pre-mRNA splicing; n=1;
Bigelowiella natans|Rep: Spliceosomal snRNA-associated
Sm core protein required for pre-mRNA splicing -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 141
Score = 42.7 bits (96), Expect = 0.009
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +1
Query: 103 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
+ + ++G+P+K++H+AE H ++ + G++ G+L+ +EDN N + V +
Sbjct: 3 STSKNVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWNLCLKKVII 53
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 39.5 bits (88), Expect = 0.082
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN-----KPTAGRGK 398
T R G+ ++++V++RGS I F LPD L+ +P R G K T G GK
Sbjct: 49 TARGGKETKMDSVFVRGSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGK 101
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMN 231
M+ +PIKVL +A V+ E TGEVY G + E ++NMN
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMN 40
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 35.9 bits (79), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 121 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
G+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 87 GLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 126
>UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 394
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 294 YIRGSKIRFLILPDMLKNAPM--FKRQGNKPTAGRGKSA 404
++ GSK+RF+++PDML NAP+ G+ +G G A
Sbjct: 117 HLIGSKVRFMVIPDMLTNAPVGNISSSGSLGLSGSGTGA 155
>UniRef50_Q1KVX9 Cluster: Cell division protein; n=1; Scenedesmus
obliquus|Rep: Cell division protein - Scenedesmus
obliquus
Length = 3665
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = -2
Query: 406 IALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTF----SSCATRPSLYVLLRES 239
++ FP +FP N FF S N+ + IL+ R++ F SS T+P + +L+R+
Sbjct: 2383 VSPFPNNVGFVFPSFFNSATFFG-SSNLLSYILQKRIFYFFEHFSSVLTQPDMDILIRQK 2441
Query: 238 FGNSYYPQLQLISLYKLHRY 179
G ++ I L +Y
Sbjct: 2442 KGMIFWDIWAEILLKAAEKY 2461
>UniRef50_A1ZIV0 Cluster: Serine/threonine protein kinases,
putative; n=2; Microscilla marina ATCC 23134|Rep:
Serine/threonine protein kinases, putative - Microscilla
marina ATCC 23134
Length = 877
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -2
Query: 337 MSGNIKNLILEPRMYTFSSCATRPSLYVLLRESFGNSYYPQLQLISLY 194
+ G IK L L ++YT ++ + Y L ESF S+ ++QLI++Y
Sbjct: 80 VKGKIKCLTLFGQLYTTTNKTSEALTYFLRAESFAQSFNAEIQLINIY 127
>UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Rep:
Adherence factor - Chlamydophila felis (strain Fe/C-56)
Length = 3298
Score = 34.7 bits (76), Expect = 2.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 367 KGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASVRYFLDS 525
KG++ + DE R+ Y E +L + +++V++ T+E K + A V L S
Sbjct: 435 KGVDRISDENRIEYLEKELKLSEDEVKQYKETIETNKKKIQDIVAKVNEGLGS 487
>UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:
F5M15.7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 255
Score = 33.5 bits (73), Expect = 5.4
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 264 DGRVAQLENVYIRGSKIR 317
DG+V+QLE+V+IRGSK+R
Sbjct: 233 DGKVSQLEHVFIRGSKVR 250
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 33.5 bits (73), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
+P+ +L +GH + E GE Y G L+ ++ MN +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINL 40
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 33.5 bits (73), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7;
Eukaryota|Rep: Small nuclear ribonucleoprotein D1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 93
Score = 33.1 bits (72), Expect = 7.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE++ IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 20 TLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVAGRGR 74
>UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Trypanosoma brucei|Rep: Small nuclear
ribonucleoprotein, putative - Trypanosoma brucei
Length = 131
Score = 33.1 bits (72), Expect = 7.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAE 219
+P++ + EA G +V ET G VY GKL++ +
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLD 38
>UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=37; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D1 - Homo sapiens (Human)
Length = 119
Score = 32.7 bits (71), Expect = 9.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,565,316
Number of Sequences: 1657284
Number of extensions: 12708179
Number of successful extensions: 34165
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34154
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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