BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00624 (728 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 73 2e-13 03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 73 2e-13 01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 33 0.18 04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 32 0.54 04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 28 6.6 02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 28 8.7 >02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-137920 Length = 132 Score = 73.3 bits (172), Expect = 2e-13 Identities = 29/49 (59%), Positives = 39/49 (79%) Frame = +1 Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252 ++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNIT 49 Score = 66.9 bits (156), Expect = 2e-11 Identities = 28/42 (66%), Positives = 38/42 (90%) Frame = +3 Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365 D+ T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR Sbjct: 46 DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87 >03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836, 7417925-7417981,7420005-7420067 Length = 132 Score = 72.9 bits (171), Expect = 2e-13 Identities = 29/49 (59%), Positives = 39/49 (79%) Frame = +1 Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252 ++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNIT 49 Score = 66.9 bits (156), Expect = 2e-11 Identities = 28/42 (66%), Positives = 38/42 (90%) Frame = +3 Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365 D+ T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR Sbjct: 46 DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87 >01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283, 8561377-8561642,8561967-8562111,8562411-8562530, 8562611-8562930,8564161-8564341,8564434-8564580, 8565186-8565497,8566303-8566450,8566592-8566765, 8567385-8567446,8567499-8567571,8567628-8567683, 8568370-8568645,8569541-8569588,8569870-8569991, 8570258-8570413,8571037-8571079,8572624-8572701, 8572972-8573070,8573168-8573209,8573302-8573304 Length = 1264 Score = 33.5 bits (73), Expect = 0.18 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240 +P+ +L A+GH + E GE Y G L+ + MN + Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40 >04_04_0192 - 23471346-23471572,23473004-23473195,23474342-23474418, 23475810-23475850,23475928-23475974,23476108-23476194, 23476807-23477011,23477747-23477866 Length = 331 Score = 31.9 bits (69), Expect = 0.54 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%) Frame = +3 Query: 282 LENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 407 L+++ +RG+ IR+ ILPD L + + + KPTAGR A+ Sbjct: 217 LDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263 >04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024, 11922113-11922248,11922959-11923006,11924130-11924228, 11924317-11924385,11924465-11924599,11924687-11924755, 11925221-11925276,11925465-11925624,11926534-11926698, 11927484-11927568,11927646-11927849,11928396-11928487, 11928571-11928613,11930727-11930884,11931520-11931630, 11931947-11932012,11933716-11933784,11934181-11934255, 11934330-11934506,11934598-11934683,11936259-11936313, 11936901-11936939,11938105-11938230,11938319-11938432, 11939208-11939265,11939485-11939623,11939698-11939783, 11939842-11940041 Length = 1148 Score = 28.3 bits (60), Expect = 6.6 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +1 Query: 634 CLFKDYYYVLKCNNKVLSRFSVFYF 708 C F++ YY LKC N++ ++++F Sbjct: 347 CSFREPYYKLKCKNELPDGHNLYFF 371 >02_04_0403 - 22622014-22622075,22622159-22622350,22624834-22624910, 22625026-22625039 Length = 114 Score = 27.9 bits (59), Expect = 8.7 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%) Frame = +3 Query: 285 ENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 392 +++ +RG+ IR+ ILPD L + + + KPTAG+ Sbjct: 56 DHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,202,249 Number of Sequences: 37544 Number of extensions: 322965 Number of successful extensions: 770 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 770 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1909952136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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