Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00624
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 73 2e-13
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 73 2e-13
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 33 0.18
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 32 0.54
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 28 6.6
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 28 8.7
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 73.3 bits (172), Expect = 2e-13
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +1
Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNIT 49
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/42 (66%), Positives = 38/42 (90%)
Frame = +3
Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
D+ T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 46 DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +1
Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
++ S+G+P+K+LHEA GHVVT E TGEVYRG ++E EDN NCQ+ +T
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNIT 49
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/42 (66%), Positives = 38/42 (90%)
Frame = +3
Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
D+ T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 46 DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
+P+ +L A+GH + E GE Y G L+ + MN +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 282 LENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 407
L+++ +RG+ IR+ ILPD L + + + KPTAGR A+
Sbjct: 217 LDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 634 CLFKDYYYVLKCNNKVLSRFSVFYF 708
C F++ YY LKC N++ ++++F
Sbjct: 347 CSFREPYYKLKCKNELPDGHNLYFF 371
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +3
Query: 285 ENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 392
+++ +RG+ IR+ ILPD L + + + KPTAG+
Sbjct: 56 DHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,249
Number of Sequences: 37544
Number of extensions: 322965
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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