Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00624
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   3e-18
SB_33671| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   6.7  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = +1

Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
           MSIGVPIK+LHEAEGHV+T ET  GEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1   MSIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITV 48



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 41/57 (71%), Positives = 46/57 (80%), Gaps = 5/57 (8%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPT-----AGRGKSAIL 410
           T RDGRV+QLE V++RGSKIRFLILPDMLKNAPMFK+   K +     AGRGKSAIL
Sbjct: 49  TARDGRVSQLEQVFVRGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGKSAIL 105


>SB_33671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +1

Query: 352 QCSKDKGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASVRYFLDS 525
           QC  D   + +   G   Y        DE VEE G  +E  KV  +H   +VR F D+
Sbjct: 71  QCILDLADSTIIPFGVTDYAVTIEKARDELVEEYGVQLEENKVTLEHFTYAVRNFSDA 128


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 388 DEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASV 507
           D  R+ + E +L++  + VEE   T+   KVG+D L  S+
Sbjct: 213 DLKRIDHLEHELMISTKTVEEHVITINEMKVGKDQLQDSL 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,678,714
Number of Sequences: 59808
Number of extensions: 402579
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)