Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00624
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    81   6e-16
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    64   7e-11
Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    29   3.4  
Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    28   5.9  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 2/48 (4%)
 Frame = +1

Query: 115 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM--TLVT 252
           S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+  T+VT
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVT 50



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 371
           T+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAPMFK  G
Sbjct: 50  TFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/36 (77%), Positives = 33/36 (91%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 362
           T+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAP FK
Sbjct: 36  TFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPXFK 71



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 2/34 (5%)
 Frame = +1

Query: 157 HVVTCETNTGEVYRGKLIEAEDNMNCQM--TLVT 252
           H+VT ET TGEVYRGKL EAEDNMNCQ+  T+VT
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVT 36


>Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical
           protein K01B6.2 protein.
          Length = 361

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 282 AVQLGHLCMYCYESHLAIHIILSFN*FPSINFTGI---CFTSHYMTF 151
           A +   LC+ CY+  +  H+++S N F S+ F       FT  + TF
Sbjct: 89  AARFAQLCLICYDISIYTHLVISLNRFISLYFPTSYQNIFTERFTTF 135


>Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical
           protein T06E6.3 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 270 GHLCMYCYESHLAIHIILSFN*FPSINFTGICFTSHYMTFRLVKY 136
           G++ M CY++    H I+S N F S+ FT I F +     +  KY
Sbjct: 52  GYILMICYKASTYFHFIISLNRFLSV-FTPI-FYNQMFNIKFTKY 94


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 154 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVHTEMAELH 279
           G V++ ET  G VY+GKL   + N N  +T+  V      LH
Sbjct: 7   GSVISTETKDGNVYQGKLTTYDTN-NGNLTMANVIKNGLPLH 47


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDML 341
           T ++    +L+ + IRG+ IR++ILPD L
Sbjct: 46  TVKNKEPVKLDTLSIRGNNIRYIILPDPL 74


>Z68114-4|CAA92159.1|  324|Caenorhabditis elegans Hypothetical
          protein F17A2.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 6  RDFFEIFFPIFIVNNLRNNTELLSFIVRFS 95
          R F E+F+P F++ +L +   ++ FI+ ++
Sbjct: 8  RQFLEVFYPFFLITSLISQLFVIYFILNYT 37


>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 336 CPVILKI*SWNHGCTHSRAVQLGHLCMYCYESHLAIHIILSFN*F 202
           CP+IL    W+       +   G + ++CYE  +  H+++S N F
Sbjct: 62  CPMIL----WDQKLLKEYSHICGFVLLFCYELSVLTHLLISLNRF 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,362
Number of Sequences: 27780
Number of extensions: 316577
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)