Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00623
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   1.2  
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    28   1.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.9  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   6.4  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   8.5  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 408  LALKCFFFCF*NLQILL--KLCIILPFSLKFLTSNNVVVMRVTLINQPLAL 554
            LA++  F     LQ+ +  +LC  L FS  F+TSN +V++ + +  Q L++
Sbjct: 1330 LAIQLHFATDEELQVTISFRLCAFLCFSDPFITSNYLVMIVLRIARQLLSI 1380


>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 200 FIPGRLLRAWHRCKLRYSRNL 138
           F+P  LL+A+H+C+ R +R L
Sbjct: 63  FVPQPLLKAFHKCQARLTREL 83


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 208 VRPSFQEGSCVPGIGANSDTPGICSGHSSGEALSSFSELK 89
           V+PS  EG+    +    D P I  G + G A  + SELK
Sbjct: 162 VQPSVDEGTTQNNLQMGLDEPNIIEGFAEGHA--NLSELK 199


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 160  NSDTPGICSGHSSGEALSSFSELKRLSSKDVNG 62
            N DT    SG  S    SSF +  R   K++NG
Sbjct: 975  NKDTLDHVSGPISNSVSSSFKDFTRTPFKEING 1007


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 179 AGAFLE*RSHKTGLHLHATTWNTYSGG 259
           AGAFL     K  +HL    WN Y+ G
Sbjct: 233 AGAFLGGILAKASMHLTDPIWNQYTAG 259


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 172 GIGANSDTPGICSGHSSGEALSSFSELKR--LSSKDVNGISS 53
           G+ +NS++P       +GE L  F  L+    +  +VN + S
Sbjct: 114 GLNSNSESPDDLQNAQTGETLRGFDRLREAGFTETEVNNLRS 155


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 239 WNTYSGGLI-MEVKKLHDLAYQLGLEEAKEMTRGKYLNIFASKRQR*IL 382
           W+ +   ++ +++ K H     L + E K M RG Y ++  SKR + +L
Sbjct: 153 WHNFGYSILALKLGKQHTFVKLLKIYE-KYMARGAYAHLTVSKRMKDVL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,348
Number of Sequences: 5004
Number of extensions: 57445
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)