Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00623
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0373 - 17037945-17040641                                         31   0.72 
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598...    30   1.7  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    29   3.9  
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210...    29   5.1  
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653...    28   8.9  
07_01_1207 + 11511754-11513865                                         28   8.9  
03_02_0464 - 8683232-8684596                                           28   8.9  
01_06_0514 + 29955129-29955796,29955903-29956023                       28   8.9  

>09_04_0373 - 17037945-17040641
          Length = 898

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 187 GSCVPGIGANSDTPGICSGH--SSGEALSSFSELKRLSS 77
           GSC PG G+   +P  C  +  SSG A  S+  LK L+S
Sbjct: 324 GSCTPGDGSTLASPAACQNNDSSSGGASVSYIALKPLTS 362


>09_04_0427 -
           17458974-17459129,17459227-17459335,17459753-17459862,
           17459981-17460226,17460591-17460680,17461325-17461602,
           17461814-17461942,17462007-17462418
          Length = 509

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 136 SGHSSGEALSSFSE---LKRLSSK-DVNGISSDDAWSSTIEFCFAATRA 2
           S HS  + L  F E   LKRL ++ + NG   DD W+    F   ATR+
Sbjct: 25  SSHSQEDQLIKFMESRALKRLRNRPNKNGPGEDDQWADPGRFSHLATRS 73


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 236  LLHVSVVLFCETFIPGRLLRAWHRCKLR 153
            L +VSV L C+T I  R   +W  CKL+
Sbjct: 944  LCNVSVQLLCDTIIYDRKYSSWISCKLQ 971


>02_01_0314 +
           2106976-2107658,2107792-2107931,2108367-2108636,
           2109938-2110254
          Length = 469

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 136 SGHSSGEALSSFSELKRLSSKD--VNGISSDDAWSSTIEFCFAA 11
           SGHSSG   SS SE+   SSK      I S     +TIE  FA+
Sbjct: 53  SGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFAS 96


>11_06_0500 +
           24362627-24362828,24363046-24363704,24364958-24365300,
           24366227-24366645
          Length = 540

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 26/89 (29%), Positives = 40/89 (44%)
 Frame = -3

Query: 362 LMQIYSSIFHGSSL*LLPGPVDKLSHEVFLLP**DHRCKCSKLLHVSVVLFCETFIPGRL 183
           L+Q+Y  +F    L  L G  DK+  EVFL       C+ S    V+ ++F    + G +
Sbjct: 314 LLQLYQLLFDLKELMELCGQADKIQSEVFLKKAMKKACRDSDDA-VADIVFQALKVDGFI 372

Query: 182 LRAWHRCKLRYSRNLFRP*FW*SSIKLLR 96
           LR     K ++  N  R   W    ++LR
Sbjct: 373 LRLLRYLKSQF--NFCRTQAWKIRNEILR 399


>07_01_1207 + 11511754-11513865
          Length = 703

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 200 RSHKTGLHLHATTWNTYSGGLIMEVKKLHDLAYQLGLEEAKEMTRG 337
           R    G  +++ TWNT +GG I    ++ D    +GL   +EM RG
Sbjct: 264 RMRDEGTEVNSVTWNTIAGGYI----QMRDYRAAVGL--IREMVRG 303


>03_02_0464 - 8683232-8684596
          Length = 454

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  SVRRSLIELHQNYGLNKFREYRSLHRCQARRSLPG 195
           SVRR L   H    L +F EYR L R +A R   G
Sbjct: 268 SVRRILRIHHNPRVLTRFEEYRDLVRARAARRCAG 302


>01_06_0514 + 29955129-29955796,29955903-29956023
          Length = 262

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 88 RLSSKDVNGISSDDAWSST 32
          RLSSK +N +  D AWS T
Sbjct: 28 RLSSKGLNAVDPDSAWSPT 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,645
Number of Sequences: 37544
Number of extensions: 337725
Number of successful extensions: 765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)