Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00623
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical p...    31   0.64 
AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.     31   0.64 
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    31   0.64 
Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    28   7.9  
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   7.9  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   7.9  

>Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical
           protein ZK632.13 protein.
          Length = 161

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 272 VKKLHDLAYQLGLEEAKEMTRGKYLNI 352
           ++ + +  Y LG+EEA++  RGK LN+
Sbjct: 107 IRNIQNSVYTLGIEEARQCRRGKLLNV 133


>AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.
          Length = 161

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 272 VKKLHDLAYQLGLEEAKEMTRGKYLNI 352
           ++ + +  Y LG+EEA++  RGK LN+
Sbjct: 107 IRNIQNSVYTLGIEEARQCRRGKLLNV 133


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 538 LIRVTLMTTTLFEVRNFRLKGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPLPF* 359
           LI +++     F V+ +R   K+I   ++  KF+  +K+ FNA    T + +  + +P  
Sbjct: 211 LISLSIAIMVYFGVKGYRSMNKLIAQSNSSQKFRSVQKQLFNALVLQTFIPVLLMHIPAS 270

Query: 358 CKYIQVF 338
             Y  +F
Sbjct: 271 AIYFTIF 277


>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 PMPGTQEPSWNEGLTKQDYTYMQQLG 242
           P PG QEP  +E ++K D T +++ G
Sbjct: 351 PQPGEQEPMRDESVSKSDDTIIEKEG 376


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 PMPGTQEPSWNEGLTKQDYTYMQQLG 242
           P PG QEP  +E ++K D T +++ G
Sbjct: 351 PQPGEQEPMRDESVSKSDDTIIEKEG 376


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 600 SHLCKFQFHLNFALLQSNFNDS 665
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 600 SHLCKFQFHLNFALLQSNFNDS 665
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,852,108
Number of Sequences: 27780
Number of extensions: 320039
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)