Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00623
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.56 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   1.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 90   KDFPLRMSTEYHRMMLGHQRLN 25
            KD+PLR+   +H +M  + R+N
Sbjct: 1457 KDYPLRLGPCWHAVMTTYPRIN 1478


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 481 KGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPLP 365
           + KII S SN         K++N +     + I+ +P+P
Sbjct: 311 ESKIISSLSNKTIHNNNNYKNYNKKLYYNIINIEQIPVP 349


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 269 EVKKLHDLAYQLGLEEAKEMTRGKYL 346
           +V    +LAY++GLE    +  G++L
Sbjct: 199 KVTGFEELAYKMGLESTCTLILGRHL 224


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 190  EGSCVPGIGANSDTPGICSGHSSGEAL 110
            +G+ VPG G  SD P +       ++L
Sbjct: 1868 QGNVVPGNGDRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 190  EGSCVPGIGANSDTPGICSGHSSGEAL 110
            +G+ VPG G  SD P +       ++L
Sbjct: 1864 QGNVVPGNGDRSDRPELSEAECDIDSL 1890


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,460
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)