SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00623
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    32   0.35 
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase...    30   1.4  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /...    29   2.4  
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    27   9.8  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    27   9.8  
At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /...    27   9.8  
At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /...    27   9.8  
At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /...    27   9.8  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    27   9.8  

>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 496 RNFRLKGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPL 368
           RN  L GKII S +    F+  K K F    T  PLE+ + PL
Sbjct: 241 RNRSLDGKIITSLAKFMVFEPSKIKSFINSVTSVPLELIHEPL 283


>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase (PG1) GI:5669846,
           (PG2) GI:5669848 [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 470

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 477 PFSLKFLTSNNVVVMRVTLINQPL 548
           P +L+F +SNNV V  ++++N PL
Sbjct: 193 PTALRFYSSNNVTVRDISIVNSPL 216


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 684 CISQFSCCH*SCFVVMQSLNETEIYTNVID 595
           C  +++C H +C V  +SL + ++Y  ++D
Sbjct: 176 CFQEYTCSHYTCPVCSKSLGDMQVYFKMLD 205


>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 414

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 465 CIILPFSLKFLTSNNVVVMRVTLIN 539
           C +LP SLKF+  N  VV R++ +N
Sbjct: 150 CKLLPTSLKFVGMNRTVVRRISSVN 174


>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 684 CISQFSCCH*SCFVVMQSLNETEIYTNVID 595
           C  +++C H +C +  +SL + ++Y  ++D
Sbjct: 116 CFQEYTCSHYTCPICSKSLGDMQVYFRMLD 145


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32
           SDT  + SG ++G       E+ +  S   NG++S   W  T
Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32
           SDT  + SG ++G       E+ +  S   NG++S   W  T
Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331


>At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Persea americana]
           GI:166951; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 377

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
           P  ++FL+S NV+V  +T +N P
Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132


>At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Persea americana]
           GI:166951; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 446

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
           P  ++FL+S NV+V  +T +N P
Sbjct: 179 PHLIEFLSSENVIVSNLTFLNAP 201


>At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Persea americana]
           GI:166951; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 377

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
           P  ++FL+S NV+V  +T +N P
Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 338 FHGSSL*LLPGPVDKLSHEVFLLP**DHRCKCSKLLHV 225
           +HG S+ +   P   + +++FL    D++ KCSKL+H+
Sbjct: 798 YHGFSIKVFEEPY-MVKNDLFLHADKDYKTKCSKLVHM 834


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,050
Number of Sequences: 28952
Number of extensions: 287221
Number of successful extensions: 684
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -