BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00623 (739 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 32 0.35 At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 30 1.4 At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 30 1.8 At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 29 2.4 At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 29 2.4 At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 27 9.8 At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 27 9.8 At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /... 27 9.8 At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /... 27 9.8 At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /... 27 9.8 At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 27 9.8 >At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly identical to ubiquitin-protein ligase 1 [Arabidopsis thaliana] GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from [Arabidopsis thaliana] Length = 3891 Score = 32.3 bits (70), Expect = 0.35 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -1 Query: 496 RNFRLKGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPL 368 RN L GKII S + F+ K K F T PLE+ + PL Sbjct: 241 RNRSLDGKIITSLAKFMVFEPSKIKSFINSVTSVPLELIHEPL 283 >At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase, putative similar to polygalacturonase (PG1) GI:5669846, (PG2) GI:5669848 [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 470 Score = 30.3 bits (65), Expect = 1.4 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +3 Query: 477 PFSLKFLTSNNVVVMRVTLINQPL 548 P +L+F +SNNV V ++++N PL Sbjct: 193 PTALRFYSSNNVTVRDISIVNSPL 216 >At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 255 Score = 29.9 bits (64), Expect = 1.8 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = -2 Query: 684 CISQFSCCH*SCFVVMQSLNETEIYTNVID 595 C +++C H +C V +SL + ++Y ++D Sbjct: 176 CFQEYTCSHYTCPVCSKSLGDMQVYFKMLD 205 >At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Salix gilgiana] GI:6714524; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 414 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 465 CIILPFSLKFLTSNNVVVMRVTLIN 539 C +LP SLKF+ N VV R++ +N Sbjct: 150 CKLLPTSLKFVGMNRTVVRRISSVN 174 >At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 195 Score = 29.5 bits (63), Expect = 2.4 Identities = 8/30 (26%), Positives = 19/30 (63%) Frame = -2 Query: 684 CISQFSCCH*SCFVVMQSLNETEIYTNVID 595 C +++C H +C + +SL + ++Y ++D Sbjct: 116 CFQEYTCSHYTCPICSKSLGDMQVYFRMLD 145 >At3g19570.2 68416.m02482 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 644 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -1 Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32 SDT + SG ++G E+ + S NG++S W T Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331 >At3g19570.1 68416.m02481 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 627 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -1 Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32 SDT + SG ++G E+ + S NG++S W T Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331 >At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase [Persea americana] GI:166951; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 377 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545 P ++FL+S NV+V +T +N P Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132 >At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase [Persea americana] GI:166951; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 446 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545 P ++FL+S NV+V +T +N P Sbjct: 179 PHLIEFLSSENVIVSNLTFLNAP 201 >At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase [Persea americana] GI:166951; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 377 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545 P ++FL+S NV+V +T +N P Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132 >At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family Length = 1720 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 338 FHGSSL*LLPGPVDKLSHEVFLLP**DHRCKCSKLLHV 225 +HG S+ + P + +++FL D++ KCSKL+H+ Sbjct: 798 YHGFSIKVFEEPY-MVKNDLFLHADKDYKTKCSKLVHM 834 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,689,050 Number of Sequences: 28952 Number of extensions: 287221 Number of successful extensions: 684 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 684 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1624036432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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