Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00622
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 190 1e-48
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 168 3e-42
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 168 3e-42
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 142 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 114 6e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 114 6e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 2e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 7e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 7e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 4e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 4e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 4e-12
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.008
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.096
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.096
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.29
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.29
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.68
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.68
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.89
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.89
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.2
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 2.1
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 2.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.7
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.7
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.3
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 190 bits (462), Expect = 1e-48
Identities = 111/200 (55%), Positives = 127/200 (63%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKW 520
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL------- 148
Query: 521 IPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGR 700
+ L T SPD +SRR T Q L D TETTC C GSRDG
Sbjct: 149 VSLRSPTRSPD----------SSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGL 198
Query: 701 WSVKKAKLTENASLKLSMPS 760
+ +K L E S +L PS
Sbjct: 199 LNARKETLPERPSSRLLTPS 218
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 168 bits (409), Expect = 3e-42
Identities = 84/119 (70%), Positives = 95/119 (79%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG*TK 517
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 140 bits (339), Expect = 1e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 690
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFK
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 212
Query: 691 GWQVERKEGKADGKCLIEALDAIL 762
GW VERKEG A GK L+EALD+I+
Sbjct: 213 GWAVERKEGNASGKTLLEALDSII 236
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 168 bits (409), Expect = 3e-42
Identities = 84/119 (70%), Positives = 95/119 (79%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG*TK 517
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV K
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNK 154
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 140 bits (339), Expect = 1e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 690
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFK
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 212
Query: 691 GWQVERKEGKADGKCLIEALDAIL 762
GW VERKEG A GK L+EALD+I+
Sbjct: 213 GWAVERKEGNASGKTLLEALDSII 236
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAE 254
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 140 bits (339), Expect = 1e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +1
Query: 511 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 690
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFK
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 178
Query: 691 GWQVERKEGKADGKCLIEALDAIL 762
GW VERKEG A GK L+EALD+I+
Sbjct: 179 GWAVERKEGNASGKTLLEALDSII 202
Score = 107 bits (258), Expect = 6e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGH 340
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 341 RDFIKNMITGTSQADCAVLIVA 406
RDFIKNMITGTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 64/68 (94%), Positives = 64/68 (94%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVS 260
DKLK S
Sbjct: 61 DKLKVTKS 68
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 114 bits (275), Expect = 6e-26
Identities = 55/95 (57%), Positives = 68/95 (71%)
Frame = +2
Query: 233 IGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 412
+ +T+ ERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 223 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 282
Query: 413 TGEFEAGISKNGQTREHALLAFTLGVKQLIVG*TK 517
TGEFE G GQT+EHALL +LGV QLIV K
Sbjct: 283 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 246 KAE 254
+ E
Sbjct: 227 EEE 229
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 INKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPW 684
+NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W
Sbjct: 315 VNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDW 369
Query: 685 FKGWQVERKEGKADGKCLIEALDAIL 762
+ DG CL+E +D+ +
Sbjct: 370 Y------------DGPCLLELIDSFV 383
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 114 bits (275), Expect = 6e-26
Identities = 55/95 (57%), Positives = 68/95 (71%)
Frame = +2
Query: 233 IGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 412
+ +T+ ERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 241 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 300
Query: 413 TGEFEAGISKNGQTREHALLAFTLGVKQLIVG*TK 517
TGEFE G GQT+EHALL +LGV QLIV K
Sbjct: 301 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 246 KAE 254
+ E
Sbjct: 245 EEE 247
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 INKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPW 684
+NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W
Sbjct: 333 VNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDW 387
Query: 685 FKGWQVERKEGKADGKCLIEALDAIL 762
+ DG CL+E +D+ +
Sbjct: 388 Y------------DGPCLLELIDSFV 401
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (246), Expect = 2e-22
Identities = 50/115 (43%), Positives = 72/115 (62%)
Frame = +2
Query: 161 QTYHREVREGGPGNG*RILQICLGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGH 340
+ Y RE +E G + L C+ + E+G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEER--EKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 341 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 505
+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVI 252
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = +3
Query: 60 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 239
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 508 INKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KM 678
+NKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T +
Sbjct: 254 VNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG 313
Query: 679 PWFKG 693
W+ G
Sbjct: 314 NWYSG 318
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 71.3 bits (167), Expect = 7e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +2
Query: 257 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
+RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 91 KRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME--- 147
Query: 437 SKNGQTREHALLAFTLGVKQLIV 505
QT+EH +LA +GVK + +
Sbjct: 148 ----QTKEHLILAKQVGVKNMAI 166
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTT 128
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 71.3 bits (167), Expect = 7e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +2
Query: 257 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 436
+RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 91 KRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME--- 147
Query: 437 SKNGQTREHALLAFTLGVKQLIV 505
QT+EH +LA +GVK + +
Sbjct: 148 ----QTKEHLILAKQVGVKNMAI 166
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTT 128
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +2
Query: 260 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 439
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 151
Query: 440 KNGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 152 ---QTREHLLLARQVGV 165
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +2
Query: 260 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 439
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 440 KNGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +2
Query: 260 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 439
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 440 KNGQTREHALLAFTLGV 490
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 263 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
GIT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 257 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
ERGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 85 ERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 197
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.096
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +2
Query: 254 GERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 430
G R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + A
Sbjct: 53 GIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVA 107
Query: 431 GISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRR 571
GI QT EH LLA ++I+ K +S +K R+
Sbjct: 108 GIQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTT 128
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGI 158
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 257 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
ERGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 73 ERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGID 161
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 257 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 95 QRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 152
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 269 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 152
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 269 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 227 LGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
L I + +G + + I + Y + IID PGH +F M AD V++V
Sbjct: 174 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 233
Query: 407 AGTG 418
A G
Sbjct: 234 AHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 227 LGIGQTKG*GERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
L I + +G + + I + Y + IID PGH +F M AD V++V
Sbjct: 49 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 108
Query: 407 AGTG 418
A G
Sbjct: 109 AHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 143
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 143
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 311 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 507 PTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 388
PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 16 PTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 260 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 260 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 403
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 578 PHTSRRLATTQLLSLSCPFLD 640
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 578 PHTSRRLATTQLLSLSCPFLD 640
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 578 PHTSRRLATTQLLSLSCPFLD 640
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 578 PHTSRRLATTQLLSLSCPFLD 640
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTT 128
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical
protein F15E11.3 protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 210 GSFKYAWVLDKLKAEVSVVSQSILLSGSSKL 302
GS KY WVLDK + + V + L++ S L
Sbjct: 218 GSLKYIWVLDKTTSAILVENNPNLIAKSKAL 248
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 314 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 409
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,414
Number of Sequences: 27780
Number of extensions: 397732
Number of successful extensions: 1228
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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