Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00621
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1412 - 37140654-37141088,37141549-37142214 35 0.052
09_04_0564 + 18565583-18566449,18569662-18570123 34 0.090
08_02_1172 + 24898290-24899141,24900864-24901328 34 0.090
06_03_0743 + 24069752-24070483,24071890-24072345 34 0.090
05_05_0022 + 21592403-21593083,21593720-21594208 33 0.28
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 32 0.36
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 31 0.64
09_02_0366 + 7941550-7942161,7942230-7942775 31 0.84
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 30 1.9
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 30 1.9
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 29 2.6
08_02_1616 + 28260204-28262555 29 3.4
08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520... 29 3.4
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 29 3.4
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 29 4.5
01_01_0207 - 1773790-1774215,1775428-1775888,1776177-1776455,177... 29 4.5
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 28 5.9
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 28 5.9
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 28 5.9
03_06_0607 + 35037467-35038624 28 7.8
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 609
LQ H + G KPFRC C K F KG+ R
Sbjct: 277 LQTHYKRKHGAKPFRCRRCAKPFAVKGDWR 306
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 34.3 bits (75), Expect = 0.090
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C C KAF KG+ R C +W CG+
Sbjct: 344 LQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGS 389
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 34.3 bits (75), Expect = 0.090
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C C KAF KG+ R C +W CG+
Sbjct: 339 LQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGS 384
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C C KAF +G+ R C +W CG+
Sbjct: 299 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGS 344
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 609
LQ H + G KPF C C K F KG+ R
Sbjct: 285 LQTHYKRKHGAKPFACRRCAKPFAVKGDWR 314
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 186 ERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVT 365
E RL+ + EA A+A P A + VGAP+ + + RR E+L L+R P
Sbjct: 68 ENRRLA-EAEAASASASAPSKTAARKASRVGAPAPKVTEAELARRREDERLRLEREPEAA 126
Query: 366 CHRLXTT 386
R T
Sbjct: 127 KKRAART 133
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H R G + F C C K F +G+ R C +W CGA
Sbjct: 235 LQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRLWRCACGA 280
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H R G +P+ C C K F +G+ R C +W CG+
Sbjct: 266 LQTHYRRKHGARPYACRRCGKRFAVRGDWRTHEKNCGKLWFCVCGS 311
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 8 KTFACNSALEIHYRSHTKERPFKCT--VCERGF 100
K F C+ L H + H ERP KCT C++ F
Sbjct: 1262 KKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAF 1294
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 195 RLSGQYEATHANAQDPRHAAGFDKNVVGAPSSED-GRDQSPERRSPEKLDLKRSPPVTC 368
R+ GQ ++ N + G ++ APSS+ ++ PE+ PEK P +TC
Sbjct: 106 RIPGQPNSSTENVKAITTRGGTNEIAKEAPSSDSTDKEDQPEKTLPEKKKNPGCPTITC 164
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 487 GVPQELLSSSALQIHMRTHTGDKPFRC--AVCQKAFTTKGNSR 609
G ++ + SS L+ H HTG K F C C KAF+ N R
Sbjct: 122 GCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLR 164
>08_02_1616 + 28260204-28262555
Length = 783
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 348 RSPPVTCHRLXTTHHPSTCRLYRNGPVFRVVRHIHHRSKHHPSIYAGCAARTSLVVSVTN 527
R+ V HRL T + T + +G V H H HHP GC AR + +++
Sbjct: 712 RTTIVVAHRLATVRNAHTIAVIDDGKVAEQGSH-SHLLNHHPD---GCYARMLQLQRLSH 767
Query: 528 PH 533
H
Sbjct: 768 SH 769
>08_02_0213 +
14349821-14350396,14351360-14351610,14351695-14352070,
14352210-14352341,14352425-14352600,14353176-14353299
Length = 544
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 205 GNMKQHMLTHKIRDMPPASIRMSSGRPLARMGGIR 309
G+ H++T ++R + S+ +S PLA + G+R
Sbjct: 26 GSQYTHLITRRVRQLGVLSLCVSGTAPLASLAGLR 60
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 479 LCGVCRK-NFSRRQRYKST*GHTPETSPLDVLSARRHSP 592
+CG C + R + G PETS +DV S R H P
Sbjct: 1384 VCGACGQLGHMRTNKLCPKYGEDPETSEMDVNSIRSHPP 1422
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = +1
Query: 529 HMRTHTGDKPFRCAV--CQKAF 588
H+R HTG++P++C+ C ++F
Sbjct: 867 HIRVHTGERPYKCSAPDCGQSF 888
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 41 HYRSHTKERPFKCTVCERGFS 103
H R HT ERP+KC+ + G S
Sbjct: 867 HIRVHTGERPYKCSAPDCGQS 887
>01_01_0207 -
1773790-1774215,1775428-1775888,1776177-1776455,
1776601-1776724,1776811-1777020
Length = 499
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 246 HAAGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVTCHRLXTTHHPSTCRLYRN 419
++ G D++ +G ED + E S + + R V H L PS C +YRN
Sbjct: 428 NSTGQDRSKIGC-LVEDVKKFGVEFISVSFIHVSRCSNVAAHTLARCSEPSVCNVYRN 484
>05_07_0003 + 26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 279 APSSEDGRDQSPERRSPEKLDLKRSPPVTCHRLXTTHHPSTCRLYRNGPVFRVVRHIHHR 458
A S+ D + + + E + + R+ V HRL T + R+G V RH+
Sbjct: 1217 ATSALDAESERAVQAALESVMVGRTTVVVAHRLSTIRGADVIAVLRDGEVVATGRHVELM 1276
Query: 459 SKHHPSIYA 485
+K +YA
Sbjct: 1277 AK-KDGVYA 1284
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 487 GVPQELLSSSALQIHMRTHTGDKPFRC 567
G ++ L SS L+ H HTG+K F C
Sbjct: 78 GCDKKFLDSSKLKRHFLIHTGEKNFVC 104
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 524 KST*GHTPETSPLDVLSARRHSPRRVTQGAYGHSHVERRRF--SSRSANVS 670
+S+ G TP S D SAR P T GA H E F SS ++ VS
Sbjct: 273 QSSRGPTPRQSNFDEHSARPPKPPATTTGALNHDAKELHMFVWSSSASPVS 323
>03_06_0607 + 35037467-35038624
Length = 385
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 476 HLCGVCRKNFSRRQRYK-ST*GHTPETSPLDVLSARRHSPRRVTQGAYGHSHVERRRFSS 652
H CGVC K F R + GH E L+ SP R A RRRF S
Sbjct: 164 HFCGVCGKGFKRDANLRMHMRGHGEEYKSAAALAKPGGSPSRSPAAA---DAAARRRFYS 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,972,831
Number of Sequences: 37544
Number of extensions: 475039
Number of successful extensions: 1745
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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