Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00621
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    48   6e-08
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    40   3e-05
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    39   5e-05
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    32   0.006
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.50 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   1.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.7  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 48.4 bits (110), Expect = 6e-08
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 5   SKTFACNSALEIHYRSHTKERPFKCTVCERGF 100
           SK+F+    L +H R HTKERP+KC VCER F
Sbjct: 126 SKSFSVKENLSVHRRIHTKERPYKCDVCERAF 157



 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGFSTKSS 115
           KTFA  + L  HYR+HT E+P++C  C + FS K +
Sbjct: 99  KTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKEN 134



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +1

Query: 505 LSSSALQIHMRTHTGDKPFRCAVCQKAFT 591
           + S  L IHMRTHTG+KP+ C  C K FT
Sbjct: 186 IQSGQLVIHMRTHTGEKPYVCKACGKGFT 214



 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 529 HMRTHTGDKPFRCAVCQKAFTTKGN 603
           H RTHTG+KP++C  C K+F+ K N
Sbjct: 110 HYRTHTGEKPYQCEYCSKSFSVKEN 134



 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 511 SSALQIHMRTHTGDKPFRCAVCQKAF 588
           S  L++H RTHTG+KP+ C +C K+F
Sbjct: 216 SKQLKVHTRTHTGEKPYTCDICGKSF 241



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 5   SKTFACNSALEIHYRSHTKERPFKCTVCERGFS 103
           SKTF  +  L IH R+HT E+P+ C  C +GF+
Sbjct: 182 SKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFT 214



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGF 100
           K F C+  L++H R+HT E+P+ C +C + F
Sbjct: 211 KGFTCSKQLKVHTRTHTGEKPYTCDICGKSF 241



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 511 SSALQIHMRTHTGDKPFRCAVCQKAFTTKG 600
           S  L  HMR HTG++P +C VC K F   G
Sbjct: 160 SGKLHRHMRIHTGERPHKCTVCSKTFIQSG 189



 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKG 600
           L +H R HT ++P++C VC++AF   G
Sbjct: 135 LSVHRRIHTKERPYKCDVCERAFEHSG 161



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGF 100
           + F  +  L  H R HT ERP KCTVC + F
Sbjct: 155 RAFEHSGKLHRHMRIHTGERPHKCTVCSKTF 185



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGFSTKSS 115
           K+F  N  L++H  +H  E+ +KCT+C   F +K +
Sbjct: 239 KSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKT 274



 Score = 29.9 bits (64), Expect = 0.023
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTK 597
           L++H   H G+K ++C +C + F +K
Sbjct: 247 LKLHQVAHYGEKVYKCTLCHETFGSK 272



 Score = 29.5 bits (63), Expect = 0.031
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 523 QIHMRTH--TGDKPFRCAVCQKAF 588
           Q H+R+H   G+ P+RC +C K F
Sbjct: 78  QSHLRSHGKEGEDPYRCNICGKTF 101



 Score = 28.3 bits (60), Expect = 0.071
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKER--PFKCTVCERGFS 103
           K F   +  + H RSH KE   P++C +C + F+
Sbjct: 69  KAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFA 102



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 538 THTGDKPFRCAVCQKAFTTK 597
           T+  +K ++C +CQKAF  K
Sbjct: 55  TNIEEKTYQCLLCQKAFDQK 74



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 17  ACNSALEIHYRSHTKERPFKCTVCERGFSTKS 112
           AC S   +   ++ +E+ ++C +C++ F  K+
Sbjct: 47  ACGSETPL---TNIEEKTYQCLLCQKAFDQKN 75


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 520 LQIHMRTHTGDKPFRCAVCQKAF 588
           LQ H+RTHTG+KPF C  C +AF
Sbjct: 58  LQGHIRTHTGEKPFSCQHCNRAF 80



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGFS 103
           K F+    L+ H R+HT E+PF C  C R F+
Sbjct: 50  KAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 505 LSSSALQIHMRTHTGDKPFRCAVCQKAFT 591
           +S  AL++H+RTHT   P +C +C KAF+
Sbjct: 27  VSLGALKMHIRTHT--LPCKCHLCGKAFS 53


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 609
           L+ HMR HTG+KP+ C+ C + F    N R
Sbjct: 25  LKTHMRLHTGEKPYHCSHCDRQFVQVANLR 54



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 535 RTHTGDKPFRCAVCQKAFT 591
           RTHTG+KPF C  C K FT
Sbjct: 2   RTHTGEKPFECPECHKRFT 20



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERPFKCTVCERGF 100
           K F  +  L+ H R HT E+P+ C+ C+R F
Sbjct: 17  KRFTRDHHLKTHMRLHTGEKPYHCSHCDRQF 47



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 496 QELLSSSALQIHMRTHTGDKPFRCAVC 576
           ++ +  + L+ H+R HTG++P+ C +C
Sbjct: 45  RQFVQVANLRRHLRVHTGERPYACELC 71



 Score = 28.3 bits (60), Expect = 0.071
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 47  RSHTKERPFKCTVCERGFS 103
           R+HT E+PF+C  C + F+
Sbjct: 2   RTHTGEKPFECPECHKRFT 20



 Score = 27.9 bits (59), Expect = 0.094
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  LEIHYRSHTKERPFKCTVC 88
           L  H R HT ERP+ C +C
Sbjct: 53  LRRHLRVHTGERPYACELC 71


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTK 597
           L+ H+R H G KPF+C  C  +   K
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNK 29



 Score = 29.5 bits (63), Expect = 0.031
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 32  LEIHYRSHTKERPFKCTVCERGFSTKS 112
           LE H R+H   +PFKC  C      KS
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNKS 30



 Score = 24.6 bits (51), Expect = 0.87
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 505 LSSSALQIHMRTHTGDKPFRCAVCQKA 585
           ++ S L  H+++H+    +RCA C  A
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCANCTYA 53



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 11  TFAC--NSALEIHYRSHTKERPFKCTVC 88
           +++C   S L  H +SH+    ++C  C
Sbjct: 23  SYSCVNKSMLNSHLKSHSNVYQYRCANC 50


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 562 RCAVCQKAFTTKGNSRCI 615
           +C++CQ+ F  +GN  C+
Sbjct: 273 KCSLCQRRFEEQGNYSCL 290


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 8   KTFACNSALEIHYRSHTKERP--FKCTVCERGFSTKSS 115
           K     ++L+ H      ER   ++C +CER + +++S
Sbjct: 13  KVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNS 50


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 473 KHLCGVCRKNFSRRQRYK 526
           KH C   R+NF + Q  K
Sbjct: 253 KHACAEYRRNFKKMQEEK 270


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +3

Query: 177 GLVERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERRSPEKL 338
           GL  R    G +EA H NA+  +      KN +   S   G     E    EK+
Sbjct: 42  GLGMRYAFLGAFEAAHLNAEGMKKYCETYKNSIYDVSMTFGPVPKFEGEMAEKI 95


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +1

Query: 304 IRVQNGGRPKNWT*NALRLSRATAY 378
           +RV NGG+ +++   A++  +++A+
Sbjct: 39  VRVSNGGKEQDFRFEAIQCLQSSAF 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,212
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)