Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00621
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 38 0.005
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 37 0.014
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 34 0.075
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 34 0.100
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 33 0.23
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 32 0.40
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 29 2.1
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 29 2.8
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 29 3.8
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 29 3.8
At1g04030.1 68414.m00390 expressed protein 29 3.8
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 28 6.6
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 28 6.6
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 28 6.6
At2g36295.1 68415.m04454 expressed protein 28 6.6
At5g61060.1 68418.m07662 histone deacetylase family protein simi... 27 8.7
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 8.7
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C +C KAF KG+ R C +W +CG+
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFAVKGDWRTHEKNCGKLWYCSCGS 294
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 32 LEIHYRSHTKERPFKCTVCERGFSTK 109
L+ HY+ +PF C +C + F+ K
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFAVK 274
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C C KA KG+ R C +W TCG+
Sbjct: 252 LQTHYKRKHGSKPFSCGKCGKALAVKGDWRTHEKNCGKLWYCTCGS 297
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 34.3 bits (75), Expect = 0.075
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G +PF C C KAF KG+ R C +W +CG+
Sbjct: 327 LQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEKNCGKLWYCSCGS 372
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 33.9 bits (74), Expect = 0.100
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPF C C KAF +G+ R C +W CG+
Sbjct: 288 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGS 333
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRC-AVCQKAFTTKGNSR-----C--IWALTCGA 636
LQ H + G KPFRC C+K F +G+ R C +W CG+
Sbjct: 173 LQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWFCVCGS 219
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 520 LQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 609
LQ H + G KPF C +C K KG+ R
Sbjct: 216 LQTHYKRKHGHKPFSCRLCGKLLAVKGDWR 245
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 144 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERR 323
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 88 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 143
Query: 324 SPEKLDLK-RSP 356
++ + RSP
Sbjct: 144 RERSVEERSRSP 155
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 144 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERR 323
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 99 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 154
Query: 324 SPEKLDLK-RSP 356
++ + RSP
Sbjct: 155 RERSVEERSRSP 166
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 144 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERR 323
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 129 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 184
Query: 324 SPEKLDLK-RSP 356
++ + RSP
Sbjct: 185 RERSVEERSRSP 196
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 526 IHMRTHTGDKPFRCAVCQKAFTTKGNSRCIW 618
+H+R D+ RC C + T +G++ +W
Sbjct: 10 LHLRLRRNDRKNRCKCCLSSATNEGSTAVVW 40
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 8 KTFACNSALEIHYRSHTKERPFKCT 82
K F + L +H R H ERPF+C+
Sbjct: 1247 KKFRAHKYLVLHQRVHKDERPFECS 1271
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 5 SKTFACNSALEIHYRSHTKERPFKCTVCERGFS 103
S TF A H R HT ERP+ C V G S
Sbjct: 1276 SMTFKWQWARTEHLRLHTGERPYICKVDGCGLS 1308
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 8 KTFACNSALEIHYRSHTKERPFKCTV--CERGFS 103
K F +S L+ HY HT ER + CT C + FS
Sbjct: 117 KKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFS 150
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
subsp. vulgare]
Length = 1225
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 279 APSSEDGRDQSPERRSPEKLDLKRSPPVTCHRLXTTHHPSTCRLYRNGPVFRVVRH 446
A S+ D + +S + + E+L + R+ V HRL T T + NG V H
Sbjct: 1147 ATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNH 1202
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 397 RHAAFTETAQCSEWSATSTTAANIIQAFMRGV-PQELLSSSALQIHMRTHTGDKPFRCAV 573
R+ A S W +TS + + A M + P++L S+S +R + D+P CA+
Sbjct: 273 RNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKPLRINHDDRPVLCAL 332
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 662 SPTATRSAAAPHVSAHMHLELP 597
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 662 SPTATRSAAAPHVSAHMHLELP 597
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 662 SPTATRSAAAPHVSAHMHLELP 597
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At2g36295.1 68415.m04454 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = +3
Query: 171 CFGLVERLRLSGQYEATHANAQDPRHAAGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKR 350
C GLV R G E A +P H S EDG D E D
Sbjct: 4 CVGLVNR----GTEEEEKQEANEPEHDGE-------GSSEEDGEDDLFEINLEAVSDTAT 52
Query: 351 SPPVTCHRL 377
SPP C RL
Sbjct: 53 SPPYDCQRL 61
>At5g61060.1 68418.m07662 histone deacetylase family protein similar
to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
contains Pfam profile PF00850: Histone deacetylase
family
Length = 660
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 611 HLELPFVVNAFWQTAHLKGLSPVCVLMWICNADDE 507
H E P + W+ L G+S CV++ A+D+
Sbjct: 46 HPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDK 80
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 303 DQSPERRSPEKLDLK---RSPPVTCHRLXTTHHPSTCRLYRNGPVFRVVRHIHHRSKHHP 473
D ER E LD R+ V HRL T + + +G V H H H
Sbjct: 1194 DAESERSVQEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPD 1253
Query: 474 SIYA 485
IYA
Sbjct: 1254 GIYA 1257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,220
Number of Sequences: 28952
Number of extensions: 331930
Number of successful extensions: 1075
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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