Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00620
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    32   0.079
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    29   0.42 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   1.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   3.9  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   5.2  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.8  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   6.8  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   6.8  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   6.8  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   9.0  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    25   9.0  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -1

Query: 550 WRILTEDILCECIINSIPGWSGFSDFPIWSYISGSSC--SFATNSLLIFS 407
           W++L  +I  + ++ S+P +S F+ F +++ I G +   S A  S+ +FS
Sbjct: 513 WKLLLMEICIQVLVESLPVFSMFATFVVFTTIMGQTITPSIAFTSISLFS 562


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 97  LKIIEILKETEADTKNLFGRYGSQXMKDWQDVERNYEKE 213
           L ++EI ++ + D   L   + +Q M DW D E+ YE++
Sbjct: 689 LSLLEIYRDLDEDDVQLSIGHIAQQMLDWTDNEKLYERK 727


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 49  DIAALLSGSYINYFH-CLKIIEILKETEADTKNLFGRYGSQXMKDWQDV 192
           D   +L    I  F  CL++IEI KET+A+   +F     Q +  W D+
Sbjct: 187 DSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVF---LEQILPPWMDM 232


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 294 KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQE 446
           K E+   D + K     +N +S   EFL L  Q   + EKI+ E+V + +E
Sbjct: 78  KNEETTTDSDGKD----QNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEE 124


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 466 WSYISGSSCSFATNSLLIFSPWIPSCLHKARNSDLLD 356
           W Y SG       N  L  + W  +C+ K  +SDL++
Sbjct: 310 WFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIE 346


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
           IW+YIS +        LL  S WI +CLH
Sbjct: 95  IWNYISVAEMG---GVLLFLSYWIWTCLH 120


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 285 QIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQL 395
           QI+++ +    F K+    +K+E  S  E   LCKQL
Sbjct: 15  QISQQPETDLVFTKRSECKVKDELFSDKENSILCKQL 51


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
           IW+YIS +        LL  S WI +CLH
Sbjct: 95  IWNYISVAEMG---GVLLFLSYWIWTCLH 120


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
           IW+YIS +        LL  S WI +CLH
Sbjct: 67  IWNYISVAEMG---GVLLFLSYWIWTCLH 92


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 469 IWSYISGSSCSFATNSLLIFSPWIPSCLH 383
           IW+YIS +        LL  S WI +CLH
Sbjct: 95  IWNYISVAEMG---GVLLFLSYWIWTCLH 120


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 MHYKLYTWLEWF**FPYL 465
           +HY+ Y W  W+   PYL
Sbjct: 337 LHYQFYAWFAWY--SPYL 352


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 355 HQVNQSFW-LCVNNLVSKVRRSREN*WRNC 441
           HQ   + W  C+ N+ +K+ +S E   +NC
Sbjct: 38  HQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,183
Number of Sequences: 5004
Number of extensions: 46703
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)