Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00620
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0147 + 12277012-12277207,12277401-12277495,12277608-122779... 47 1e-05
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 36 0.035
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 31 0.57
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 31 0.75
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 29 3.0
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480 29 4.0
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 28 5.3
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 28 7.0
11_06_0216 - 21345865-21346152,21347153-21347297,21348311-213483... 27 9.3
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 27 9.3
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 27 9.3
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 27 9.3
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 9.3
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 27 9.3
>06_02_0147 +
12277012-12277207,12277401-12277495,12277608-12277949,
12278074-12278223,12278311-12278832,12279082-12279290,
12279412-12279544,12279814-12279954
Length = 595
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/67 (28%), Positives = 40/67 (59%)
Frame = +3
Query: 270 PGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQEL 449
P ++Q+ K +Q A+ +++ AD + A S + + C++LG+QG +++EL+ + L
Sbjct: 167 PYQRKQMQKTQQQLAELDRREADIKRLAALSATRYAEACQELGLQGINVRQELIESAKTL 226
Query: 450 PEIYDQI 470
P + +I
Sbjct: 227 PSTFTKI 233
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 22 AIQXMPAHQDIAAL-LSGSYINYFHCLKIIEILKETEADTKNLFGRYGSQXMKDWQDVER 198
A +P D + L L I Y KI IL E+ +++N+FGR +W+ + +
Sbjct: 47 AFASLPRDLDPSLLALEPDEIGYLEAKKIYGILLESNPESRNIFGRLTGSA-GEWEAIVK 105
Query: 199 NYEKENLYLAXAAQMLVRKL 258
YEK++++L AAQ++V+ +
Sbjct: 106 AYEKDHVFLGEAAQIMVQNV 125
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 35.5 bits (78), Expect = 0.035
Identities = 16/56 (28%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +3
Query: 402 QGEKIKRELVAKLQELPEIYDQIGKSLKPLQPGIEF--IMHSQSISSVRILQKLYQ 563
+G +++ +V KL+E+ + +Q ++L+ L+PGI+F ++++++ S V +L Y+
Sbjct: 355 KGWELEAAVVGKLEEIEGLVEQCNQALRKLKPGIDFQYMLNTKASSPVELLGTSYK 410
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +3
Query: 279 KRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEI 458
+RQ A+EE+ +AD EK++ Y A ++ AL + I G+ + E + E
Sbjct: 431 RRQAAREEEQKADAEKRNYAYQAAIAKAEEASKALRPEKNISGKHAESEELV----FGED 486
Query: 459 YDQIGKSLK 485
Y+ + KSL+
Sbjct: 487 YEDLQKSLE 495
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 324 KKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEIYDQIGKSLK 485
K+H DYLK E K + L KQ + E +++ ++ ++YD + K ++
Sbjct: 692 KEHGDYLKTEIEDKQKRLQAVKQSLLSIEAKDQDINNRINRAFKVYDLLEKRIE 745
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 29.1 bits (62), Expect = 3.0
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Frame = +3
Query: 255 ISYEIPGLKRQIA----KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKR 422
IS E+ L+ Q+ K + +AD E+ LK S E A CK + +
Sbjct: 933 ISQEVLSLRSQVENLTRKSQLLEADLERT-TKQLKEAISIAGEETAKCKAAKEVIKSLTA 991
Query: 423 ELVAKLQELPEIYDQIGKSLKPLQPGI----EFIMHSQSISSVR 542
+L ++LPE + S P PGI + + S+S+ S R
Sbjct: 992 QLKGMAEKLPEGAGLVKNSRLPPLPGISIPTDISVASESLGSPR 1035
>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
Length = 910
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 240 DAGQEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKI 416
D +E YE+ K + + + AD ++K L+NE S +A+ +L ++ K+
Sbjct: 90 DVVEEYEYEVNRCKVEALELSASTADHKRKRQQNLENEDLFNSGMVAVPDELAVKTRKL 148
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 589 AVNNHILQN-W*SFWRILTEDILCECIINSIPG 494
AV +IL + W S W + E +LC+C S G
Sbjct: 551 AVRTNILSSVWRSTWTTIPEMLLCDCTYTSCQG 583
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = -2
Query: 507 TLYLAGVVLVISLFGHISQAAPAVSPLILS*SSHLGYQVVYTKPETLIYLMLHSLDSLHA 328
T +L G V+ I F IS APA + I + ++V + T IY + SL+SL A
Sbjct: 322 TGFLHGSVMFIVGFC-ISWNAPATNNPIFA-------EIVPERSRTSIYALDRSLESLFA 373
Query: 327 SFQNPLV 307
SF P+V
Sbjct: 374 SFAPPVV 380
>11_06_0216 -
21345865-21346152,21347153-21347297,21348311-21348360,
21348564-21348938,21349717-21349842
Length = 327
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 287 LPLQPWNLITNFLTSICAASAKYKFSF 207
+PL PW L+ ++ ++ A Y F F
Sbjct: 1 MPLPPWGLVVGWVMALIAVELAYAFIF 27
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 13 INNAIQXMPAHQDIAALLSGSYINYFHCLKIIEILKETEADTKNLFG 153
IN+ P H+ I + G F C I ++L+E T + +G
Sbjct: 7 INSKASGKPVHEVIMEMTDGGVDYSFECTGITDVLREAFVSTHDGWG 53
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 378 ALCKQLGIQGEKIKRELVAKLQELPEIYDQIGKSLKPLQPGIEFIMHSQSI 530
+LCK+ E++ RE V+ +E +IY+++ K+ + + +MH+ S+
Sbjct: 403 SLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSL 453
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 346 RMKHQVNQSFWLCVNNLVSKVRRSREN*WRNCR 444
R+K + W+CV+++ +VR +RE CR
Sbjct: 285 RIKDHFDLQMWVCVSSIFDEVRLTREMLEHACR 317
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 321 EKKHADYLKNEASSKSEFLALCK-------QLGIQGEKIKRELVAKLQELP-EIYDQIGK 476
E KHAD N S SE + LC QLGI+ E + E + KL ++ Y+++
Sbjct: 1712 EDKHADLRDNHGSLLSEKVLLCNQVKNMQDQLGIKNE--QHEALLKLHQMQVNDYEEMVS 1769
Query: 477 SLK 485
SL+
Sbjct: 1770 SLQ 1772
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 417 KRELVAKLQELPEIYDQIGKSLKP 488
K E + +L +LP+IYD++ +SL P
Sbjct: 431 KVEKLKELSKLPDIYDRLTRSLAP 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,212
Number of Sequences: 37544
Number of extensions: 273537
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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