Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00620
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 32 0.44
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_45619| Best HMM Match : M (HMM E-Value=0.01) 30 1.3
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 29 4.1
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 29 4.1
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47) 29 4.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 28 7.2
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22) 28 7.2
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) 27 9.5
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 27 9.5
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.5
>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 105 bits (253), Expect = 2e-23
Identities = 45/73 (61%), Positives = 60/73 (82%)
Frame = +1
Query: 7 EKINNAIQXMPAHQDIAALLSGSYINYFHCLKIIEILKETEADTKNLFGRYGSQXMKDWQ 186
EKIN AIQ MP ++I LLSG++INYFHCL+I+E+LK +E+ TKN+FG Y S+ MKDWQ
Sbjct: 46 EKINAAIQDMPPVEEITTLLSGTFINYFHCLRIVELLKVSESGTKNIFGGYSSKRMKDWQ 105
Query: 187 DVERNYEKENLYL 225
++ R YEK+N+YL
Sbjct: 106 EIIRLYEKDNVYL 118
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 EIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQ-------GEKIKR 422
E + I+ E A + +K +Y N A K ++ +CK++GI+ GE IK
Sbjct: 123 ECQDIVNTISMEPFAIQECTRKENEYTTNAAEYKEQYRKVCKKMGIKFSMTSLKGESIKT 182
Query: 423 ELVAKLQELPEIYDQIGKSLKPLQPGIEF 509
EL+ L+ELP++Y + +S K LQ I++
Sbjct: 183 ELLHLLKELPDVYQTVSESTKDLQDTIQY 211
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 539 EDSPEALPILQYVIIHGNTTVYEWSYGEPP 628
E SPE P+L Y++ HGNTTVY+W G+ P
Sbjct: 229 ESSPEISPLLSYILEHGNTTVYQWRTGKVP 258
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/106 (20%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Frame = +3
Query: 276 LKRQIAKEEQAQADF--EKKHADY------LKNEASSKSEFLALCKQLGIQGEKIKRELV 431
LK +I+ +EQ +A+ K + + +K+++S ++ K+ I+ K++++++
Sbjct: 105 LKVKISDKEQERAELLSNKSRSPFKQATKSVKSDSSVRTSSTTPSKRAAIEAAKLEQKMI 164
Query: 432 A--KLQELPEIYDQIGKSLKPLQPGIEFIMHSQSISSVRILQKLYQ 563
A + QE+ D+I + K L+ E + + +S+ +++Q++ +
Sbjct: 165 ALQRRQEIDRRRDEIERERKELERSSEREILREELSAAQVIQRILE 210
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 31.1 bits (67), Expect = 0.77
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +3
Query: 276 LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
LK+Q KEE+ + D +N + K E+L K+L EK KRE K ++ E
Sbjct: 865 LKKQKQKEEEEKQDKTLSSKKSFENWKAKKDEYLK--KEL---KEKKKREKTEKEKQEEE 919
Query: 456 IYDQIGKSLKPLQPGIE 506
Y++ KS Q +E
Sbjct: 920 KYEKTIKSADEFQKWVE 936
>SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 31.1 bits (67), Expect = 0.77
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +3
Query: 276 LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
LK+Q KEE+ + D +N + K E+L K+L EK KRE K ++ E
Sbjct: 4 LKKQKQKEEEEKQDKTLSSKKSFENWKAKKDEYLK--KEL---KEKKKREKTEKEKQEEE 58
Query: 456 IYDQIGKSLKPLQPGIE 506
Y++ KS Q +E
Sbjct: 59 KYEKTIKSADEFQKWVE 75
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +3
Query: 234 STDAGQEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEK 413
S + IS E LK+Q+A+ E A +K L S ++ +A+C G +
Sbjct: 1458 SVQGFKPISAEPDELKKQLAEVEALHASLLEKRP-LLATAHDSGNKLVAVC-----DGPR 1511
Query: 414 IKRELVAKLQELPEIYDQI 470
++ ++ KLQ E YD +
Sbjct: 1512 VEDDVAGKLQPFQEAYDAL 1530
>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
Length = 1315
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 249 QEISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEA-SSKSEFLALCKQLGIQGEKIKRE 425
+E S E L ++ + E + EKK + LKN+A SS E+ CK+L + E+ K
Sbjct: 338 KETSSEYERLSEELGERENLLKESEKKRNE-LKNKALSSLKEYRVKCKKLEREAEQGKEA 396
Query: 426 L 428
+
Sbjct: 397 M 397
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 249 QEISYEIPGLKRQIAKEEQA-QADFEKKHADYLKNEASSKSEFLALCKQL 395
Q+ EI GLK +AKE Q QAD ++ ++ K+ + E L L + +
Sbjct: 690 QQYESEIQGLKDHLAKESQRHQADVRRRDQEHKKDITNIHKESLLLLRAI 739
>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 191 TSCQSFIXCDPYLPNKFLVSASVSFSISMIF 99
+SC SF P+ PN+ + + S SI +IF
Sbjct: 57 SSCASFSILSPFFPNEAAIKGADSASIGIIF 87
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 276 LKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPE 455
LK + AKE + +F K LKNE S+K + K++ + EK + L K +L +
Sbjct: 396 LKVKDAKEHFEKCEFLTKEMHRLKNEWSNKEKEY---KRMATEQEKESKSLRKKNNQLED 452
Query: 456 IYDQIGKS 479
GKS
Sbjct: 453 ELTNQGKS 460
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 QEISYEIPGLKRQI-AKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRE 425
++IS ++ +K Q+ A EEQ + +AD +E + A +++ Q + +K +
Sbjct: 549 EKISEQLKAVKEQVLALEEQVLKQQLRVYADDFTSERQDRERVQAEKEKISEQLKAVKEQ 608
Query: 426 LVAKLQELPEIYDQ 467
++A L+E IY++
Sbjct: 609 VLA-LEEQLRIYEE 621
>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
Length = 626
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 300 EQAQADFEKKH--ADYLKNE-ASSKSEFLALCKQLGIQGEKIKRE 425
E+ + D K+ AD +++E +K E LAL K+L + GE+ KR+
Sbjct: 286 EKLRGDISKQFSDADEIQSELGKTKQEMLALQKELFLSGEREKRK 330
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 255 ISYEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKI---KRE 425
I E L++ A ++ QADFEK+ +++ E + + + L Q KI K +
Sbjct: 1423 IKEENDQLRKMEADGQELQADFEKQLESLVESTDQLMQEKVEVIQTLEGQNAKIEAEKEQ 1482
Query: 426 LVAKLQELPEIYDQIGKSLKPLQPGIEFIMHS 521
L+++L+ E + + + L + +E I S
Sbjct: 1483 LLSELKTQKEKLNTVIEELDDTKSTLEIIKES 1514
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 294 KEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEIYDQIG 473
K E+ QAD + + +N ++ + A + Q E +KRE + E+ ++ DQ+G
Sbjct: 1495 KLEEVQADLDNSQKE-ARNYSTEMYKIKAAFDEQSEQVEALKRENKSLASEVNDLADQLG 1553
Query: 474 KSLK 485
+ K
Sbjct: 1554 EGGK 1557
>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
Length = 256
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 279 KRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALC 386
+ Q+ KEE+A+ EK+ + +NE S K + +C
Sbjct: 204 EEQLRKEEEARRQQEKERREAKENELSPKPRGILVC 239
>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
Length = 396
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 249 QEISYEIPGLKRQIAKEEQAQADFEKKHADY-LKNEASSKSEFLA--LCKQLGIQGEKIK 419
+ + +I GLK++I + ++ D EK+ D KN+ K +F+ K+L Q E +
Sbjct: 163 KSLEKDIYGLKKEIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRE 222
Query: 420 RELVAKLQELPEIYDQI 470
++ A +++ E+ ++
Sbjct: 223 NDIKAMKEQIQEMESEL 239
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 249 QEISYEIPGLKRQIAKEEQAQADFEKKHADY-LKNEASSKSEFLA--LCKQLGIQGEKIK 419
+ + +I GLK++I + ++ D EK+ D KN+ K +F+ K+L Q E +
Sbjct: 609 KSLEKDIYGLKKEIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRE 668
Query: 420 RELVAKLQELPEIYDQI 470
++ A +++ E+ ++
Sbjct: 669 NDIKAMKEQIQEMESEL 685
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 261 YEIPGLKRQIAKEEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIK-RE--LV 431
Y++ +KRQ ++ K ADY S K L C+ ++G++I+ RE L+
Sbjct: 84 YKVNPVKRQWTEKSPTPKKLLKAGADYTIVSFSMKDFGLYQCRATNVKGQEIQSREFFLI 143
Query: 432 AKLQELPEI 458
+ +P++
Sbjct: 144 GYVAAIPDV 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,465,266
Number of Sequences: 59808
Number of extensions: 323758
Number of successful extensions: 917
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -