Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00620
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.6  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   2.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.6  
AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical prote...    23   6.1  
AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory a...    23   6.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 228  RXSTDAGQEISYEIPGLKRQIAKEEQAQADFEKKH--ADYLKNEASSKSEFLALCKQLGI 401
            R   D   ++  E   L+ ++   E+ +   EK H  +  +K E  +  +  A  K   +
Sbjct: 952  RKGNDERTQLEEEANKLREEL---EEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL 1008

Query: 402  QGEKIKRELVAKLQELPEIYDQIGKSLKPLQ 494
            + E+I + +  KLQE  +        LKPL+
Sbjct: 1009 EFEQILQTIETKLQETKDTLPHWQLQLKPLK 1039


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 297 EEQAQADFEKKHADYLKNEASSKSEFLALCKQLGIQGEKIKRELVAKLQELPEIYDQIG 473
           E   Q   +KK A+ L+ + +   E     ++L    E  +REL+ K ++L +  D++G
Sbjct: 124 ENTVQNIRDKKEAERLRRDKAKVEEDQRHYRELKAADEIKRRELIQKAEDLIQ-KDKVG 181


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   AREDQQCHPRXAGSPRHSCFTLRQLHK 83
           A+ED +C+ R   SP  S   +RQ  K
Sbjct: 853 AKEDARCYNRQQSSPDSSREAIRQEEK 879


>AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical protein
           protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +1

Query: 181 WQDVERNYEKENLYL 225
           W+++++ Y+ EN+Y+
Sbjct: 98  WENLQKKYDPENIYV 112


>AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory
           appendage protein SAP-3 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +1

Query: 181 WQDVERNYEKENLYL 225
           W+++++ Y+ EN+Y+
Sbjct: 98  WENLQKKYDPENIYV 112


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,947
Number of Sequences: 2352
Number of extensions: 10813
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)