Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00617
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.5  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   4.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 415 GKRFVFTLICYLDLRF 368
           G RF  TL C +DL +
Sbjct: 152 GMRFTTTLACMMDLHY 167


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 312 ATVQADMKHWPFEXSVMEANLRSR*HIRVKTNLFPRGSQFH 434
           A    D   WP++      N  S  H   + N+F     FH
Sbjct: 167 AKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFH 207


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 284 FGIEYCVVGVIATWFLAASPMRRSVSVNAT*DGVVL 177
           F   +C+VG++A    + + +R+  SV A  +G+ L
Sbjct: 6   FIFAFCLVGILAVSEESINKLRKIESVCAEENGIDL 41


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 76 PFCIFNQSCYLFLKK 32
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,559
Number of Sequences: 438
Number of extensions: 3917
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)