Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00616
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   2.0  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   2.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   7.9  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 RNHLLNYSWRYKNSVREVVHVTLRQSP 271
           +N     + ++K  +R+V+H  ++Q P
Sbjct: 67  KNECAKCNDKHKEGIRKVIHYLVKQKP 93


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 310 GCGKCTLRWRLGNRRL 263
           GC KCT + + G+R++
Sbjct: 74  GCSKCTEKQKEGSRKI 89


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 546 WLTSQQPTNV 517
           WL SQQP NV
Sbjct: 24  WLNSQQPRNV 33


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 269 PISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDES 397
           P   T P   L   +  NP    ++ P+S   P +N  +  +S
Sbjct: 328 PGHSTSPNLPLTHNIAHNPYPSHSIYPSSNLMPLNNIQNLSQS 370


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 471 RLARQACECFACSSFRRLWAVVKLARAKHNKKTCLTGHHFL 593
           R  RQ   CF       L++  ++ R   +++T +  H+F+
Sbjct: 95  RFVRQFTICFDDVDLNSLYSSYEITRFIRSRETDVYTHNFV 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,112
Number of Sequences: 336
Number of extensions: 3099
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)