Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00616
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 30 0.29
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 29 0.68
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 29 0.68
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 28 1.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 28 1.2
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 3.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 3.6
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 4.8
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 4.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.8
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 6.3
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 25 8.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 8.4
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 254 TLRQSPISQT----PPQCALPAALLKNPSSVPNVQPASTQKPRSNSISF-DESQETF 409
+L SP+ T PP+ L LL PS + N+Q ++T+ SNSI + ++Q F
Sbjct: 35 SLLDSPLLSTNEHYPPKSTL---LLSGPSPIRNIQLSATKSSESNSIDYLTDTQNIF 88
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.68
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +1
Query: 205 QLL-LEVQE*CTRGRSCYPSAISDFPNAT------AMCTSRSPTEESV 327
QLL ++ QE + +S +PS I D PN T +C S T+ESV
Sbjct: 355 QLLGIKKQESVAKKKSSFPSTIKDQPNLTLLEYLIRLCALESTTQESV 402
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 254 TLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSMD 418
T+RQ + + + + P S+PN +S+Q P +NS S ++ +S D
Sbjct: 110 TMRQGRFPSSSSEFPPKNSKYQLPGSMPNTGASSSQDPFTNSQSTEKEDAMYSKD 164
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 251 VTLRQSPISQTPPQCALPAALLKNPSS 331
+ +Q P S PP+ ALPA + PSS
Sbjct: 244 IPTQQKPSSLPPPERALPAPTMPTPSS 270
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 330 EDGFFSRAAGSAHCGGVWE 274
ED F+++A+G+ + GG W+
Sbjct: 36 EDNFYAKASGNLYLGGTWK 54
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 108 THSQSIPSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLPFG 263
+H QS+PS + T+P P + +S +S +P + V R+ +P G
Sbjct: 185 SHPQSLPSNSIPKTEPLDTPSLSNSQER---FSKSPSDGQNVRSRAKKIPSG 233
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 269 PISQTPPQCALPAALLKNPSSVPNVQPASTQKP 367
PI + P A PAA +K+P S P++ A P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 60 PRKFLIMSASPIARQATHSQSIPSKRVLITDPAQMPD 170
P+ F + SA +ARQA + I K++ + + PD
Sbjct: 33 PKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPD 69
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 539 LHNSPQTSKRRASETFASLPRKPYLTIT 456
LH +P T K +A E ASL P TI+
Sbjct: 427 LHGNPFTGKTKAVEEVASLFSAPVFTIS 454
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 90 PIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 224
P + Q + S + V+++ + + SSTP TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = +2
Query: 176 FQHTGRNHLLNYSWRYKNSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPAS 355
+QH +N N + H+ S S PP + A+ P S P + P+S
Sbjct: 128 YQHQHKNVAANSIDNLSRQYSQPNHINTHDSVNS--PPSYGIMASATNQPLSHPTIVPSS 185
Query: 356 TQKPRSNS 379
NS
Sbjct: 186 NSSSLLNS 193
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 266 SPISQTPPQCALPAALLKNPSSV 334
+P P CALPA LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 254 TLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKP 367
T Q + PP ++P+ +PS P + P S++ P
Sbjct: 1025 TASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLP 1062
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 RQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 382
R S QTPP LP+ LL + P+ P +P+ NS+
Sbjct: 17 RSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 81 SASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGT-IYSTTPGGTRIVYERSF 248
+ SP + HS+ P + A + ++++TP G Y + G + Y SF
Sbjct: 256 TVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVSSF 312
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 260 RQSPISQTPPQCALPAALLKNPS-SVPNVQPASTQKPRSNSIS 385
R+ P + +CA+ +LKNP+ S+ ST +P S +S
Sbjct: 298 RERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 314 LKNPSSVPNVQPASTQKPRSNSI 382
+KN + V NV PA+ P SN+I
Sbjct: 602 VKNINIVSNVDPANASTPLSNTI 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,835
Number of Sequences: 5004
Number of extensions: 53024
Number of successful extensions: 160
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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