Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00616
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                79   4e-15
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               30   1.6  
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       30   1.6  
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)                    29   2.9  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          29   3.8  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   5.0  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)                       28   6.6  
SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  27   8.7  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   8.7  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    27   8.7  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 35/63 (55%), Positives = 46/63 (73%)
 Frame = +3

Query: 78  MSASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLP 257
           M+ +   R +  +++IPS+RV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L 
Sbjct: 1   MNGTQAERGSPLARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLE 60

Query: 258 FGN 266
             N
Sbjct: 61  LRN 63


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +3

Query: 123  IPSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVY----ERSFMLPFGN--LRFPKR 284
            +PS  +++  P+    VYS  P G I   +P G +IVY    E+    P G   +  P  
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPSGEKIVYSPSGKKIVYLPSG 1182

Query: 285  HRNVHFP 305
             +NV+ P
Sbjct: 1183 EQNVYSP 1189


>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 156 AQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLPFGNLRFPKRHRNVHFPQPY*RIRLRY 335
           + +P+V SS P G   S+ P G+ +   R  + P     FP R     F  PY R+ L Y
Sbjct: 187 SSLPEVLSSLPEGL--SSLPEGS-LFPTRGSLFPNQGALFPTRG----FSLPYPRVSLPY 239

Query: 336 PTCSRP 353
           P  S P
Sbjct: 240 PRVSLP 245


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 51  KLTPRKFLIMSASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 230
           ++T  +  + SAS      T  QS+P     +T P Q+  +  STP  T+Y  T  G  I
Sbjct: 423 QVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPP-QVNPITISTPSSTLYDCTYCGDNI 481

Query: 231 VYERSFMLPF 260
             + +    F
Sbjct: 482 TLKSNLQRHF 491


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 312 Y*RIRLRYPTCSRPAHKNLDLTRYHSTSRRKPS 410
           Y ++RL YP+ S P  K+  LT Y STS   P+
Sbjct: 131 YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
          Length = 267

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 513 KTSKRNIRKLAAQAVFDNNSFK 448
           KT KR+I+K+  +++F NN+FK
Sbjct: 151 KTPKRHIKKVNKKSLFSNNNFK 172


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 333  YPTCSRPAHKNLDLTRYHSTSRRKPSAWISKLVINFL 443
            Y T   P     DLT +HS S R PS ++ ++V++ L
Sbjct: 1410 YLTTPEPLGTISDLTVWHSDSGRSPSWYLRRIVVSDL 1446


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 182  HTGRNH--LLNYSWRYKNSVREVVHVTLRQS 268
            ++GR+H  LLNY W  K+S ++ ++  LR S
Sbjct: 2172 NSGRDHDNLLNYRWHQKDSFQQSMYRRLRDS 2202


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 26  QVSCVEFCKINTTKVFNNVSVTYREAGHSQPIDSFKEGPDHGSRSNA*CLFQHTGRNHL 202
           Q +  ++ +I  T         +++ GH QP + F   P H    N   +FQ    +HL
Sbjct: 246 QAAPPQYQQIQATHQPTQQQTFFQQQGHQQPGNIFDNPPFHPQSPNQPQIFQQQALHHL 304


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 399 CDSSNDIELDRGFCVLAGCTLGTEDGFFSRAAGSAHCGGVW 277
           C  ++ + ++RG+ + +  T  + DG ++ +AG  + G  W
Sbjct: 202 CTCASSLGVERGYILDSQMTSSSNDGAYTASAGRLYGGSSW 242


>SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 15  YPTNKCLVWNFVKLTPRKFLIMSASPIARQATHSQSIPSKRVLITDP 155
           YP    + WN+  L P   L + A  I +  +H +SI    +   DP
Sbjct: 244 YPNITNVHWNYTTLLPGDCLFLPAEYIHQVRSHIRSISVTMLFTVDP 290


>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
          Length = 913

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 126 PSKRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFM 251
           P+K VLI  P  +    S+ P G I+       ++VY +  M
Sbjct: 410 PNKHVLIKRPVNISSAESTDPNGHIFVLCVSPVKLVYSQQEM 451


>SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 459 YCQIRLARQACECFACSSFRRLWAVVKLARAKHNKKT 569
           YC + ++   C C  CSS+  +W  V   R     +T
Sbjct: 158 YCMV-VSLTVCLCIICSSYSAVWVRVHFKRPAQRTQT 193


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 282 RHRNVHFPQPY*RIRLRYPTCSRPAHKNLDLTRYHSTS 395
           +H N   PQ       ++   ++P H+N    RYH+T+
Sbjct: 14  QHNNTAIPQHRTTKTPQHQNTAKPQHRNTTTPRYHNTA 51


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +2

Query: 206 NYSWRYKNSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSN 376
           NY   Y+ S      V  R   I +    C L     KN S+ P+V P      R N
Sbjct: 283 NYKAHYERSNVAAQLVGTRDDVIKREKEACKLQEGQNKNSSTCPSVSPEIQASERDN 339


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/94 (22%), Positives = 38/94 (40%)
 Frame = +1

Query: 127 LQRGS*SRIPLKCLMSIPAHRAEPSTQLLLEVQE*CTRGRSCYPSAISDFPNATAMCTSR 306
           L++G+     ++ L     H A    QL +   E         P+  + F + T +C S 
Sbjct: 327 LEKGAIKNAFIEELQEKKKHEALRVAQLYMSRDEQYDEYARVMPTGPNVFSSVTKICVSE 386

Query: 307 SPTEESVFGTQRAAGQHTKTSI*LDIIRRVAGNL 408
           S   +S   +  A   +TKT+   D++   +  L
Sbjct: 387 SRATKSADRSLEAISSNTKTTHDQDLVNSSSSEL 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,510
Number of Sequences: 59808
Number of extensions: 425964
Number of successful extensions: 1027
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)