Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00616
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    31   0.47 
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    31   0.47 
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      31   0.47 
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    28   4.4  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 227 NSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 385
           N+V + V +   QS  S  PP+      + + P+ VP   PA+  +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 227 NSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 385
           N+V + V +   QS  S  PP+      + + P+ VP   PA+  +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 227 NSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 385
           N+V + V +   QS  S  PP+      + + P+ VP   PA+  +P SN+ S
Sbjct: 380 NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNS 432


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 254 TLRQSPISQTPPQCALP--AALLKNPSSVPNVQPASTQKP 367
           T+R  P +QTPP  A P  A  L   S++P V  A TQ+P
Sbjct: 328 TMRPEPTAQTPPAPAAPPAAPALNRQSTIPPV--AMTQRP 365


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 197 HLLNYSWRYKNSVREVVHVTLRQSPI-SQTPPQCALPAALLKNPSSVPNVQP--ASTQKP 367
           HLL Y+   +N+  +  +   +  P+ S TP Q       ++N  S+PN+Q    +T KP
Sbjct: 396 HLLFYTIGGQNTYVQYYNNVAKNIPVQSDTPTQTTYIMMTVENGESLPNIQDTNGNTLKP 455

Query: 368 RSNSISF 388
            S+   F
Sbjct: 456 TSSGRRF 462


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  CKINTTKVFNNVSVTYREAGHSQPIDSFKEGPDHGSR 157
           C +   K F + SV   +AG S  + SFK G    +R
Sbjct: 34  CSLGANKSFQSKSVLLLDAGRSPSLASFKPGAPFNNR 70


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
           protein C41C4.3 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 342 CSRPAHKNLDLTRYHSTSRRKPSAWISKLVINFLNT*NC 458
           C R     +D+ R+    RR P +W++  VI      NC
Sbjct: 106 CERQCAHFVDVFRFECGDRRPPPSWLAGTVIGAKRKINC 144


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
           protein C03D6.4 protein.
          Length = 1390

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 251 VTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQ-KPRSNSISFDESQETFS 412
           VT   +   Q P    L ++L+ +PSSV   +P+S+   P+S + + + SQ T S
Sbjct: 448 VTKPSTVFGQKPEAETLKSSLVGSPSSVQTPKPSSSLFNPKSIASNIETSQLTES 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,012
Number of Sequences: 27780
Number of extensions: 306374
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)