Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00616
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01400.1 68414.m00055 hypothetical protein 30 1.0
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 2.4
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 29 3.1
At2g38820.2 68415.m04769 expressed protein contains Pfam profile... 28 4.1
At2g38820.1 68415.m04768 expressed protein contains Pfam profile... 28 4.1
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 5.4
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 28 5.4
At4g37750.1 68417.m05344 ovule development protein aintegumenta ... 27 7.2
At4g08250.1 68417.m01361 scarecrow transcription factor family p... 27 7.2
At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to ... 27 9.5
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 9.5
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 27 9.5
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 27 9.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.5
>At1g01400.1 68414.m00055 hypothetical protein
Length = 204
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 159 QMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLPFGNLRFPKRHRNVHFPQP 311
Q PD+ SS+ GT+ S R YE ++ LP +++ K RN H P
Sbjct: 138 QEPDLPSSSGIGTM-SANSHDDRRAYELAYPLPSRDIQSKKELRNAHLKTP 187
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 251 VTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 385
V LRQS +S PP+ + L ++P P P S +P+S +S
Sbjct: 20 VQLRQS-VSSQPPRRTVQETLSQSPPQSPLFHPQSPPEPKSLPLS 63
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 30 CLVWNFVKLTPRKFLIMSASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYS 206
CL+ + V +T + S+ P+ + H ++PS P P VY T +Y+
Sbjct: 11 CLILSLVTITTADYYSPSSPPVYKSPEHKPTLPS-------PVYTPPVYKPTLSPPVYT 62
>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 310
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 372 LTRYHSTSRRKPSAWISKLVINFLNT*NCYCQIRLARQACECFACS 509
L+R +S S ++K+V+NF+ N + R R C CF+ S
Sbjct: 59 LSRGNSGDFEPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGS 104
>At2g38820.1 68415.m04768 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 288
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 372 LTRYHSTSRRKPSAWISKLVINFLNT*NCYCQIRLARQACECFACS 509
L+R +S S ++K+V+NF+ N + R R C CF+ S
Sbjct: 59 LSRGNSGDFEPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGS 104
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 72 LIMSASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYSTTP 215
++ + P + S+P +V P +PDVYSS P YS P
Sbjct: 19 MVAAYEPYTDSSPPPYSVPLPKVEYKSPP-LPDVYSSPPPPLEYSPAP 65
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 251 VTLRQSPISQTPPQCALPAALLKN 322
V R+ P+ + P CAL A L+KN
Sbjct: 188 VLFRKMPVKDSSPLCALVAGLIKN 211
>At4g37750.1 68417.m05344 ovule development protein aintegumenta
(ANT) identical to ovule development protein
aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
Length = 555
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 84 ASPIARQATHSQSIPSKRVLITDPAQMPDVYSSTPGGTIYS 206
+S + AT S S+P + V+ + + Y S P G IYS
Sbjct: 41 SSSTSSAATSSSSVPPQLVVGDNTSNFGVCYGSNPNGGIYS 81
>At4g08250.1 68417.m01361 scarecrow transcription factor family
protein SCARECROW - Arabidopsis thaliana, PID:g1497987
Length = 483
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 332 PKTDSSVGLREVHIAVA 282
PKTD S GLR VH+ VA
Sbjct: 94 PKTDESKGLRLVHLLVA 110
>At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to
EXL3 (GP:15054386) [Arabidopsis thaliana]
Length = 337
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 221 YKNSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQ 400
Y + ++ + + R+ ++ PP LPAA+ + V + ++K +++ISF+
Sbjct: 183 YSSFIQNLYSLGARRIGVTTLPPLGCLPAAI----TVVGPHEGGCSEKLNNDAISFNNKL 238
Query: 401 ETFSMDL 421
T S DL
Sbjct: 239 NTTSQDL 245
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 263 QSPISQTPPQCALPAALLKNPSSVPNVQPASTQKP 367
QSP Q PP P + +K P++ P V+P +T P
Sbjct: 148 QSPPVQ-PPTYKPPTSPVKPPTTTPPVKPPTTTPP 181
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 914
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 65 KVFNNVSVTYREAGH-SQPIDSFKE 136
+ FNN+ V YR+AG+ + ID+++E
Sbjct: 398 EAFNNLGVLYRDAGNITMAIDAYEE 422
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 266 SPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSM 415
SP + P A P+ L P + P+V+PA T S S+ + SM
Sbjct: 58 SPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKLTPPYASPSM 107
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 257 LRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQET 406
L+Q PI +TPP L +++ S+ ++ P S K + ++ E ET
Sbjct: 287 LKQKPIKETPP-TILKRKPMRSCSAAKSMTPTSATKHLRSFLNSKEISET 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,231
Number of Sequences: 28952
Number of extensions: 280048
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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