Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00611
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q46HV8 Cluster: Dienelactone hydrolase; n=2; Prochloroc...    33   5.5  
UniRef50_P43753 Cluster: Formate acetyltransferase; n=271; cellu...    33   5.5  

>UniRef50_Q46HV8 Cluster: Dienelactone hydrolase; n=2;
           Prochlorococcus marinus|Rep: Dienelactone hydrolase -
           Prochlorococcus marinus (strain NATL2A)
          Length = 644

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = -3

Query: 418 LIVTSIDFNDNFMYLQIWFY--ERHETFSFK 332
           LI+T +D  DN ++++ WFY  E+ ++FSFK
Sbjct: 89  LILTWVDNKDNRLWMRTWFYEEEKEKSFSFK 119


>UniRef50_P43753 Cluster: Formate acetyltransferase; n=271; cellular
           organisms|Rep: Formate acetyltransferase - Haemophilus
           influenzae
          Length = 770

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 102 SNAHINISLSIQYMYFLHGHQVSSQSGAWFSSYNGKTTVNLYISIDKK 245
           SN   N   +IQ+MYF +   + SQ+GA  S     T +++YI  D K
Sbjct: 246 SNPATNAQEAIQWMYFAYLAAIKSQNGAAMSFGRTATFIDVYIERDLK 293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,349,568
Number of Sequences: 1657284
Number of extensions: 11833867
Number of successful extensions: 24223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24218
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)