Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00611
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.5  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   5.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 594 KTNYENL*NYTNFEKGKKIPTKIHKNNN 677
           K  YE+L N +  + GK++  KI  N N
Sbjct: 51  KIRYESLTNPSRLDSGKELYIKIIPNKN 78


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 278 RLFYCYYILLMFLVYTNI*IYS 213
           +L+   Y +LMFL+YT   IYS
Sbjct: 29  KLYQKLYPVLMFLIYTITEIYS 50


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 680 HIIIFMNFCWDFFTFFKIRIISKIFVIRFFYK 585
           HI  F   C DF     + I+      R  YK
Sbjct: 73  HIFFFFAICCDFIALIVVNIVHVFRKRRVNYK 104


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 539 SKYHQRYGIQRLHLSICKKNELRKSLKL 622
           SKY+    I   +  +CKK++ +K +++
Sbjct: 21  SKYNSILNIALKNFRLCKKHKTKKPVQI 48


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 539 SKYHQRYGIQRLHLSICKKNELRKSLKL 622
           SKY+    I   +  +CKK++ +K +++
Sbjct: 21  SKYNSILNIALKNFRLCKKHKTKKPVQI 48



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 160 CPCRKYMY*MDRLIF 116
           C C  YM  MDRL F
Sbjct: 315 CLCELYMAFMDRLYF 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,404
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)