Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00611
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70505.1 68414.m08114 expressed protein                             27   9.8  
At1g65390.2 68414.m07419 disease resistance protein (TIR class),...    27   9.8  
At1g65390.1 68414.m07420 disease resistance protein (TIR class),...    27   9.8  

>At1g70505.1 68414.m08114 expressed protein
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 558 MASSVSIYRFVKKTNYENL*NYTNFEKGKKIPTKIHKNNNMLHES 692
           + S VSIYRF    N EN  +  + E+G   P    +N+N+   S
Sbjct: 149 LGSLVSIYRFRSPDNGENRVSIVDEEQGTYRPPGNAENSNVFKSS 193


>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 338 RKRFMSFVKPNL*VHEIIIKIDRCDY*HEHVISYF 442
           RK FMSF+KP L   +I + ID  +   +++IS F
Sbjct: 34  RKGFMSFLKPALKKEKINVFIDEQEERGKYLISLF 68


>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 338 RKRFMSFVKPNL*VHEIIIKIDRCDY*HEHVISYF 442
           RK FMSF+KP L   +I + ID  +   +++IS F
Sbjct: 34  RKGFMSFLKPALKKEKINVFIDEQEERGKYLISLF 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,481
Number of Sequences: 28952
Number of extensions: 261437
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)