Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00610
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.7  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 404 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGSDCGQLLRS 550
           +S  +N  + H   R + T   T    ++   +PR  P  S CGQL  +
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSHNTR--GTPRTTPASSRCGQLFNT 308


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 353 WDKVSPEFTSLP 318
           W K+ P FTSLP
Sbjct: 228 WAKLVPHFTSLP 239


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 386 ACTDTCSSCTNNHRSSHSTSRD 451
           ACTD  SSC +    S S   D
Sbjct: 32  ACTDDLSSCWSEDMGSFSLPLD 53


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 306 WQHPGQRG 329
           W++PGQRG
Sbjct: 141 WEYPGQRG 148


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 306 WQHPGQRG 329
           W++PGQRG
Sbjct: 145 WEYPGQRG 152


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 383  QACTDTCSSCTNNHRSSHSTSRDSLTLRATNVP 481
            Q   D   + TNN R+  +TS  S+     N+P
Sbjct: 995  QKLCDKTETHTNN-RTHSATSNSSVNANTNNIP 1026


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,944
Number of Sequences: 336
Number of extensions: 3951
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)