Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00610
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 0.73
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.7
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 27 2.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 3.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 3.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 26 5.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 5.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.8
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 6.8
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 6.8
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 9.0
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 25 9.0
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 167 LTPTLVKDEPSVKWDAEPG-QYYTLAMTDPVRRPVKNPH-FANGTTGW 304
LT ++ ++P+V+WD G + A+ + V P+K P F++G W
Sbjct: 115 LTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPW 162
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 489 FEIGTFVARSVSESRLVECELRWLF 415
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 284 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 463
A+ T+ L +S AT + A ++ +L + + SS T++ +S ST+ SL
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
Query: 464 RATNVPISKLPSS 502
+TN S P+S
Sbjct: 162 SSTNSTTSATPTS 174
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 14 FQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 133
FQ + +LT S A ++ SQV+P + I A AL Q KY
Sbjct: 7 FQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 380 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 505
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 226 VLHSGHDRPCAPS-----RKEPTFREWHHWLVGNIQGNEV 330
+LH G + CAPS +E F+++H+ L NE+
Sbjct: 739 LLHFGFEIHCAPSEEELIEREEAFKDFHNMLSFKYSANEI 778
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 331 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 486
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 338 PEFTSLPWMLPTSQWC--HS--RNVGSLRDGAQGRSWPECSTVL 219
P FT LP ++P+ +W H+ + S+ +GA+ E S VL
Sbjct: 371 PSFTWLPRLIPSQKWSERHAALMAISSIAEGAEKLMKKELSRVL 414
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 356 YWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDGAQG 249
YW V+P T L L + WC + N G L + +G
Sbjct: 23 YWPSVAPAATELISKLINAFWCQTLN-GQLVEEDEG 57
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 89 DVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDE 193
D+I K L++ +P G + LTP VK E
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 274 PTFREWHHWLVGNIQGNE--VNSGETLSQ 354
P+F+E HW+V ++ E + SG LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 353 STWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQP 517
S + +R + + SS N + +S + T+RA NV S L + VQP
Sbjct: 342 SNHSSQIRDHPSTNNNASSYQNFNETSDEGEDNDATIRANNVRSSFLEAPLPVQP 396
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 282 SRMAPLAGWQHPGQRGKLRRNFVPVRGLWTSGKDRPAQIRVPLVQTTIEAHIRRAET 452
SR +A + Q+G L R+FVP + SG PA T EA ++ ET
Sbjct: 482 SRAGFVAALESRLQKGPLMRSFVPNKSKSPSGTKSPAS------GETSEAGVKETET 532
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 265 RKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKLT 435
+K+ F + +W + +G+ + S E L +G PPE T + Y+ + YK QP
Sbjct: 2 QKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGF 60
Query: 436 FDEPRL 453
F E L
Sbjct: 61 FTEDAL 66
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 449 DSLTLRATNVPISKLPSSPRVQPRGSDC--GQLLRSA 553
D++ A ++P+SK +SP P C G LLR A
Sbjct: 41 DNVDKPANSIPLSKRSTSPSYAPYTVACPSGSLLRPA 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,707
Number of Sequences: 5004
Number of extensions: 62123
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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