Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00610
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   127   7e-30
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   127   7e-30
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    52   3e-07
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    35   0.055
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    34   0.072
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    32   0.39 
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    31   0.89 
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    30   1.6  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   2.1  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    27   8.3  
U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  127 bits (306), Expect = 7e-30
 Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +1

Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSK 429
           P APSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGLHRYV+L+YKQ  +
Sbjct: 69  PDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIYKQSGR 128

Query: 430 L-TFDEPRLTNTSSDKRANFKIAEF 501
           +   +  RLTNTS DKR  +K A+F
Sbjct: 129 IEDAEHGRLTNTSGDKRGGWKAADF 153



 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = +2

Query: 56  AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYY 232
           A++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPT VKD P VKWDAEPG  Y
Sbjct: 3   AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62

Query: 233 TLAMTDPVRRPVKNPHF 283
           TL  TDP     K P +
Sbjct: 63  TLIKTDPDAPSRKEPTY 79



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 507 EYNLGDPIAGNFYEAQYDDYVPILYKQLGA 596
           ++ LG P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 156 KHKLGAPVFGNLFQAEYDDYVPILNKQLGA 185


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  127 bits (306), Expect = 7e-30
 Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +1

Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSK 429
           P APSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGLHRYV+L+YKQ  +
Sbjct: 105 PDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLIYKQSGR 164

Query: 430 L-TFDEPRLTNTSSDKRANFKIAEF 501
           +   +  RLTNTS DKR  +K A+F
Sbjct: 165 IEDAEHGRLTNTSGDKRGGWKAADF 189



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
 Frame = +2

Query: 38  RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWD 211
           R ++T+A ++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPT VKD P VKWD
Sbjct: 32  RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91

Query: 212 AEPGQYYTLAMTDPVRRPVKNPHF 283
           AEPG  YTL  TDP     K P +
Sbjct: 92  AEPGALYTLIKTDPDAPSRKEPTY 115



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 507 EYNLGDPIAGNFYEAQYDDYVPILYKQLGA 596
           ++ LG P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 192 KHKLGAPVFGNLFQAEYDDYVPILNKQLGA 221


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +1

Query: 262 SRKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSK 429
           SRK P+  EW HWLV NI  +     +N G+    Y    P  +T LHRYV L+++   +
Sbjct: 74  SRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPRTDLHRYVILMWEHAGR 133

Query: 430 LTFDEPRLTNTSSDKRANFKIAEFAKSTT*G 522
                 R++      RA F + +F +    G
Sbjct: 134 ------RISVPKPSSRAKFNVKQFIEKNKLG 158



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 44  MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKW---DA 214
           MS ++ +F   ++ P +I  AP   L + +  G++V+ G  +    +K+ P  +W    A
Sbjct: 1   MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57

Query: 215 EPGQYYTLAMTDPVRRPVKNPHFA 286
           +P   YT+ M DP     KNP  A
Sbjct: 58  DPESIYTVLMIDPDNLSRKNPSVA 81



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 504 QEYNLGDPIAGNFYEAQYD 560
           ++  LGDPIAGNF+ AQ++
Sbjct: 153 EKNKLGDPIAGNFFLAQHE 171


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 347 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSS 502
           C ST+    +K Q C  TCS C+++  SS S+S  S +  ++    S   SS
Sbjct: 18  CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSS 69



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 347 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 475
           C S++     K Q C  TCS C+++  SS S+S  S +   T+
Sbjct: 147 CTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTD 189


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +1

Query: 295 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNT 462
           HWL  +I    +N+    G T + YV   P + +  H Y+F+L  QP+ +   E      
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLE-SYCEG 433

Query: 463 SSDKRANFKIAEFAKSTT*GIRLRATSTKRS 555
             + R  F++  F +    G+RL A ST  S
Sbjct: 434 MCETRKKFRLELFKQQH--GLRLSALSTVSS 462


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 338 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 475
           A  C ++  L L K Q C  TC  CT++  +S +TS  S  +  TN
Sbjct: 64  ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSSTCVDLTN 108


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 338 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLP 496
           A  C ++  L L K+Q C  TC  CT++  ++ S+S   + L   +  +S  P
Sbjct: 101 ASYCANSAYLTLMKQQ-CPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCP 152



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 338 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 445
           A  C ++  L L K+Q C  TC  CT++  SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 392 CRPVFSGG-PEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDG 258
           CRP  SGG P PTY D  S      P    T+Q    + VG++ +G
Sbjct: 18  CRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNG 62


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 421 VVCTRGTRICAGLSFPEVQSPRT 353
           ++C  GT +  GL+FP++Q  RT
Sbjct: 58  IICLLGTMVDVGLAFPDIQLDRT 80


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 RRAFSEMGRGARTVLHSGHDRPCAPSRKEPT 279
           ++ +SE+ + A T  HS H  P   S+K PT
Sbjct: 328 QQKYSELSKMASTDPHSNHSSPSTSSQKAPT 358


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 GHDRPCAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHR 396
           G  RP   S   P F  W HWLVG    +  ++   L+  +G     KTGL+R
Sbjct: 347 GFLRPSPTSSIRPIFN-WGHWLVGMFSWSVASATIVLALPMG-----KTGLNR 393


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 498  LGNFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSR 364
            LG+   G +   +     + EC LR+L   ++H  +  CL  + R
Sbjct: 1541 LGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQR 1585


>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = +2

Query: 125 VKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMTDPVRRPVKNPHFANGTTGW 304
           +++P+    K G+E         PS    +      T   T P + P       +GTT  
Sbjct: 631 IRHPAIFSTKIGDEAAAAAAGASPSTSAPSTSTSVQTKTTTSPTKSPTSTTITTSGTTTS 690

Query: 305 LATSRATR*TP 337
             +S AT   P
Sbjct: 691 ATSSVATAPPP 701


>U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical
           protein T13C2.4 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 128 KYPSGVEVKEGNELTPTLVKDEPSVKWD 211
           ++  G  VK  + L P+L   E +V+WD
Sbjct: 3   QHAKGASVKRASNLPPSLFPPEETVRWD 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,852,422
Number of Sequences: 27780
Number of extensions: 365988
Number of successful extensions: 1222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)