Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00609
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    77   1e-16
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    77   1e-16
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    62   3e-12
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   0.21 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   3.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   6.0  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +3

Query: 603 FDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEEFKRKYK 743
           FDVS+LTI+EG +FEVK+TAGDTHLGGEDFDNRLV +  ++FK+K+K
Sbjct: 33  FDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHK 78



 Score = 60.5 bits (140), Expect = 1e-11
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 604
           NEPTAAA+AYGLDK  + ERNVLIFDLGGGTF
Sbjct: 2   NEPTAAAIAYGLDKKAEKERNVLIFDLGGGTF 33


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +3

Query: 603 FDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEEFKRKYK 743
           FDVS+LTI+EG +FEVK+TAGDTHLGGEDFDNRLV +  ++FK+K+K
Sbjct: 33  FDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHK 78



 Score = 60.5 bits (140), Expect = 1e-11
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 604
           NEPTAAA+AYGLDK  + ERNVLIFDLGGGTF
Sbjct: 2   NEPTAAAIAYGLDKKAERERNVLIFDLGGGTF 33


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 62.5 bits (145), Expect = 3e-12
 Identities = 28/47 (59%), Positives = 39/47 (82%)
 Frame = +3

Query: 603 FDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEEFKRKYK 743
           FDVSILTID G +FEV +T+GDTHLGGEDFD +++++  +  K+K+K
Sbjct: 32  FDVSILTIDNG-VFEVVATSGDTHLGGEDFDQKVMDYFIKMVKQKHK 77



 Score = 52.4 bits (120), Expect = 4e-09
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 604
           NEPTAAA+AYGLDK    E+N+L++DLGGGTF
Sbjct: 2   NEPTAAAIAYGLDKK-GAEQNILVYDLGGGTF 32


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 455 SGHQGRRSHRRPERASHHNEPTAAALA 535
           SG  G   H+    A HH+E +AAA A
Sbjct: 8   SGFYGSHHHQSGSVAGHHHEQSAAAAA 34


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 434 CRNCDYRIPHCTS-QIGFRRLLH 369
           CR+C Y   +C S +I  RR  H
Sbjct: 289 CRDCSYATKYCHSLKIHLRRYGH 311


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 434 CRNCDYRIPHCTS-QIGFRRLLH 369
           CR+C Y   +C S +I  RR  H
Sbjct: 47  CRDCSYATKYCHSLKIHLRRYGH 69


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 547 QEPQG*EKCSYLRSGWRNLSTCPS*LSTRDR 639
           +EP   +K  Y   G  N+ TCP+ L   D+
Sbjct: 117 EEPHICDKFYYCVDGKYNMITCPNGLVYNDK 147


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 386 SLSGKYSAGCGSHSSGILQRLPASGH--QGRRSHRRPERASHHNEP 517
           SL  +YS   G H+    +R P +G   Q RR+     R S    P
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,938
Number of Sequences: 336
Number of extensions: 3839
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)