Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00609
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 226 2e-60
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 226 2e-60
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 196 3e-51
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 186 4e-48
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 138 6e-34
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 78 1e-15
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 70 3e-13
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 39 9e-04
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.2
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 28 1.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 6.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.5
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.6
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 8.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 226 bits (553), Expect = 2e-60
Identities = 130/251 (51%), Positives = 151/251 (60%), Gaps = 6/251 (2%)
Frame = +3
Query: 9 VGIDLGTTYSCVGVWQHGNVA------DHRERPGQPYHTIVRRVHGHGASHRRRSQEPGR 170
+GIDLGTTYSCVG + + V +R P T R+ G A ++
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA------ 58
Query: 171 LEP*QHXXXXXXXXXXXXXXPQDSAGHEHWPFKVINDCGKPKIQIEFKGETKRFAPEEIS 350
+ P P+ + +HWPFKVI GKP IQ+EFKGETK F PEEIS
Sbjct: 59 MNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEIS 118
Query: 351 SMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIIXXXXXXX 530
SMVL KM+E+AEA+LG V DAVVTVPAYFNDSQRQATKDAG IAGLNVLRII
Sbjct: 119 SMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 531 XXXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVN 710
L FDVS+LTI+EG +FEVK+TAGDTHLGGEDFD+RLVN
Sbjct: 179 IAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDSRLVN 237
Query: 711 HLAEEFKRKYK 743
H A+EFKRK K
Sbjct: 238 HFAQEFKRKNK 248
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 226 bits (553), Expect = 2e-60
Identities = 129/251 (51%), Positives = 151/251 (60%), Gaps = 6/251 (2%)
Frame = +3
Query: 9 VGIDLGTTYSCVGVWQHGNVA------DHRERPGQPYHTIVRRVHGHGASHRRRSQEPGR 170
+GIDLGTTYSCVG + + V +R P T R+ G A ++
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA------ 58
Query: 171 LEP*QHXXXXXXXXXXXXXXPQDSAGHEHWPFKVINDCGKPKIQIEFKGETKRFAPEEIS 350
+ P P+ + +HWPFKVI+ GKP +Q+E+KGETK F PEEIS
Sbjct: 59 MNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEIS 118
Query: 351 SMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIIXXXXXXX 530
SMVL KM+ETAEAYLG V DAVVTVPAYFNDSQRQATKDAG IAGLNVLRII
Sbjct: 119 SMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 531 XXXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVN 710
L FDVS+LTI+EG +FEVK+TAGDTHLGGEDFD+RLVN
Sbjct: 179 IAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDSRLVN 237
Query: 711 HLAEEFKRKYK 743
H +EFKRK K
Sbjct: 238 HFIQEFKRKNK 248
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 196 bits (478), Expect = 3e-51
Identities = 115/251 (45%), Positives = 140/251 (55%), Gaps = 6/251 (2%)
Frame = +3
Query: 9 VGIDLGTTYSCVGVWQHGNVA------DHRERPGQPYHTIVRRVHGHGASHRRRSQEPGR 170
+GIDLGTTYSCV VW+ NV R P T R+ G A ++
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQ------AA 62
Query: 171 LEP*QHXXXXXXXXXXXXXXPQDSAGHEHWPFKVINDCGKPKIQIEFKGETKRFAPEEIS 350
+ P P+ +HWPFKVI++ G P I++ + GE K+F +EIS
Sbjct: 63 MNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEIS 122
Query: 351 SMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIIXXXXXXX 530
+MVLTKMKE +EA L V AV+TVPAYF+DSQR ATKDAGAIAGLNVLRII
Sbjct: 123 AMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAA 182
Query: 531 XXXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVN 710
+ L FDVS+L I +G +FEV +TAGDTHLGGEDFDN LV
Sbjct: 183 IAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKI-QGGVFEVLATAGDTHLGGEDFDNALVE 241
Query: 711 HLAEEFKRKYK 743
H +EFKRK K
Sbjct: 242 HFIQEFKRKQK 252
Score = 107 bits (258), Expect = 1e-24
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 58 TGTWQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPK 237
T +II NDQG RTTPS+VAFT+TERL+GDAAKNQ A+NP NTVFDAKRLIGR+++DP+
Sbjct: 25 TANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPE 84
Query: 238 IQQDMNTGPSK 270
Q+D+ P K
Sbjct: 85 TQKDIKHWPFK 95
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 186 bits (452), Expect = 4e-48
Identities = 107/249 (42%), Positives = 144/249 (57%), Gaps = 6/249 (2%)
Frame = +3
Query: 9 VGIDLGTTYSCVGVWQHGNVA------DHRERPGQPYHTIVRRVHGHGASHRRRSQEPGR 170
+GIDLGTTYSCV V ++G V +R P T R+ G A ++Q P
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAA----KNQAPSN 93
Query: 171 LEP*QHXXXXXXXXXXXXXXPQDSAGHEHWPFKVINDCGKPKIQIEFKGETKRFAPEEIS 350
P + + +PF ++ND +P +++ G+ K+F PEEIS
Sbjct: 94 --PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEIS 151
Query: 351 SMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIIXXXXXXX 530
+M+L+KMK+TAEAYLG V AVVTVPAYFND+QRQATKDAG IAGLNV+RI+
Sbjct: 152 AMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAA 211
Query: 531 XXXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVN 710
+ + + FDVS+L+ID G +FEV +T+GDTHLGGEDFDNR++N
Sbjct: 212 IAYGLDKTDTEKHIVVYDLG-GGTFDVSLLSIDNG-VFEVLATSGDTHLGGEDFDNRVIN 269
Query: 711 HLAEEFKRK 737
+LA + RK
Sbjct: 270 YLARTYNRK 278
Score = 98.7 bits (235), Expect = 8e-22
Identities = 44/68 (64%), Positives = 54/68 (79%)
Frame = +1
Query: 61 GTWQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPKI 240
G +IIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT+FD KRLIGRKFD+ +
Sbjct: 55 GRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTM 114
Query: 241 QQDMNTGP 264
+D+ + P
Sbjct: 115 AKDIKSFP 122
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 138 bits (335), Expect = 6e-34
Identities = 92/247 (37%), Positives = 126/247 (51%), Gaps = 5/247 (2%)
Frame = +3
Query: 9 VGIDLGTTYSCVGVW--QHGNVADHRERPGQPYHTIVRRVHGH---GASHRRRSQEPGRL 173
+GIDLGTT SC+ + Q V + E + G G S +R++ +
Sbjct: 53 IGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAV----I 108
Query: 174 EP*QHXXXXXXXXXXXXXXPQDSAGHEHWPFKVINDCGKPKIQIEFKGETKRFAPEEISS 353
P P+ + P+K++ +E +G+T ++P +I
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEH-SNGDAWLEARGKT--YSPSQIGG 165
Query: 354 MVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIIXXXXXXXX 533
+L+KM+ETA YLG V++AVVTVPAYFNDSQRQATK AGAIAGLNVLR++
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAAL 225
Query: 534 XXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNH 713
FD+SIL ++ G +FEV+ST GDTHLGGEDFD LV H
Sbjct: 226 AYGLDKKNDAIVAVFD--LGGGTFDISILELNNG-VFEVRSTNGDTHLGGEDFDVALVRH 282
Query: 714 LAEEFKR 734
+ E FK+
Sbjct: 283 IVETFKK 289
Score = 82.2 bits (194), Expect = 7e-17
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1
Query: 64 TWQIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPKI 240
T ++IAN +G RTTPS VAFT D ERL+G +AK Q +NP NT F KRLIGR+F +P++
Sbjct: 71 TPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEV 130
Query: 241 QQDMNTGPSK 270
Q+D+ P K
Sbjct: 131 QRDIKEVPYK 140
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2
Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 604
NEPTAAALAYGLDK K + V +FDLGGGTF
Sbjct: 218 NEPTAAALAYGLDK--KNDAIVAVFDLGGGTF 247
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 78.2 bits (184), Expect = 1e-15
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Frame = +3
Query: 300 QIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGA 479
++++ E F+ ++ + TK+K AEA L +V D V+++PA+F D QR+A +A
Sbjct: 106 KVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAAN 165
Query: 480 IAGLNVLRIIXXXXXXXXXXXXXXXXXXXEMFLSSIWV----EEPFDVSILTIDEGSLFE 647
IAGLN LR++ + + + VSI+ G F
Sbjct: 166 IAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQ-FH 224
Query: 648 VKSTAGDTHLGGEDFDNRLVNHLAEEFKRKYK 743
+KST D +LG + D L+++ A EFK KYK
Sbjct: 225 IKSTVCDRNLGSRNMDKALIDYFAAEFKEKYK 256
Score = 60.1 bits (139), Expect = 3e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +1
Query: 73 IIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPKIQ 243
+I N+ NR+TPS V++ + R +G+AAK+ A N NTV KRL GR +DDP+I+
Sbjct: 29 VIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIK 85
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 70.1 bits (164), Expect = 3e-13
Identities = 42/138 (30%), Positives = 72/138 (52%)
Frame = +3
Query: 324 KRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLR 503
K E S L ++ E+AE +LG+ V V++VP YF D+QR+A + A AGL VL+
Sbjct: 136 KILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQ 195
Query: 504 IIXXXXXXXXXXXXXXXXXXXEMFLSSIWVEEPFDVSILTIDEGSLFEVKSTAGDTHLGG 683
+I + + + + +VS++++ +G L + ++ D +LGG
Sbjct: 196 LIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSV-KGGLMTILASVHDENLGG 254
Query: 684 EDFDNRLVNHLAEEFKRK 737
E + LVN A+EF++K
Sbjct: 255 EQLTDVLVNFFAKEFEKK 272
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +1
Query: 43 LEYGSTGTWQIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRK 222
+ + G ++AN++GNR PS +++ + G A+ Q+ N +N+V + + L+G+
Sbjct: 38 IAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNSVTNFRDLLGKS 97
Query: 223 FDD 231
D+
Sbjct: 98 HDE 100
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 318 ETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNV 497
+ + ++ EEI +M + AE + D V+TVP +FN+ QR +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 498 LRII 509
L +I
Sbjct: 191 LALI 194
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 70 QIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLI 213
+I+ R S VAF ER+ G A N P +++ + K L+
Sbjct: 46 EIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELL 93
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 722 FRKMVD*SVIKVFASQVRVAGCGLHFEQRSLVDSQDGHVERFL 594
F +++ SV + S + +A C +FE+RSL Q G + F+
Sbjct: 173 FNRIMTPSVNSQYISTIGLAKCEEYFEERSLASLQRGLKDEFV 215
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 115 VAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPKIQQDMNTGP 264
+ F+D E GD A L P + AK L+G+ D I D + P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENP 174
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 12 GIDLGTTYSCVGVWQHGNVADHRERPGQPYHTIV 113
G LG TY+ V Q G+V HR HT++
Sbjct: 1279 GCFLGNTYAFASVTQDGSVEVHRLDVNNQRHTLI 1312
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 461 HQGRRSHRRPERASHHNEP 517
H+G HR PE HH P
Sbjct: 350 HEGPEHHRGPEDKEHHKGP 368
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 396 PDRLPPSPSFLSAPCC*FLLAQIVSSHL*TRSVFSV 289
PDR P P FLS F L + +S + R+ +S+
Sbjct: 248 PDRTNPQPQFLSLTYMVFCLGTLFTSPVLVRNRYSL 283
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 239 ILGSSN---FLPISLFASNTVLLGFKATWFLA 153
ILG+S +LP+++F + ++LGF +F A
Sbjct: 526 ILGASVLRLYLPLAIFIDSELILGFPPKYFFA 557
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 8.6
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 85 DQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGR-----KFDDPKIQQD 249
D+G T S+ +F D + + GDA + + A + T A R D K ++
Sbjct: 49 DEGLNTARSFSSFQDLKGMSGDAKEQESATLVHLTKGRAHPRSRRPPRQISIDSAKKEET 108
Query: 250 MNTGPSK*STTAAN 291
NTG +K + T ++
Sbjct: 109 KNTGSTKAADTKSS 122
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 542 LDKNLKGERNVLIFDLGGGTF 604
L N+ G+R VL+F +GG T+
Sbjct: 528 LKTNVPGKRRVLVFFIGGCTY 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,885
Number of Sequences: 5004
Number of extensions: 60229
Number of successful extensions: 259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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