Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00608
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   171   4e-45
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   171   4e-45

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  171 bits (417), Expect = 4e-45
 Identities = 90/134 (67%), Positives = 103/134 (76%), Gaps = 3/134 (2%)
 Frame = +2

Query: 257 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 436
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 437 ANVIRYFPTQALNFAFKDKYKQVFSAVLTRRRILALLRW*SG--LRWCRRSHLSVLRV-P 607
           ANVIRYFPTQALNFAFKDKYKQVF   + +      LR+  G           S+  V P
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKN--TQFLRYFVGNLASGGAAGATSLCFVYP 135

Query: 608 LDFARTRLAADVGK 649
           LDFARTRLAADVGK
Sbjct: 136 LDFARTRLAADVGK 149



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 MSNLADPVAFAKDFLA 254
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 293 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 451
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 27.1 bits (57), Expect = 0.16
 Identities = 27/136 (19%), Positives = 54/136 (39%)
 Frame = +2

Query: 257 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 436
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 437 ANVIRYFPTQALNFAFKDKYKQVFSAVLTRRRILALLRW*SGLRWCRRSHLSVLRVPLDF 616
            +V      +A  F F D  + +       ++   L+ W  G+     +   ++  P D 
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP---DPKKTPFLISW--GIAQVVTTVAGIVSYPFDT 235

Query: 617 ARTRLAADVGKEMASV 664
            R R+    G+  + +
Sbjct: 236 VRRRMMMQSGRAKSEI 251



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 534 FWRYFXXXXXXXXXXXXTSLCFVYP 608
           F RYF            TSLCFVYP
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYP 135


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  171 bits (417), Expect = 4e-45
 Identities = 90/134 (67%), Positives = 103/134 (76%), Gaps = 3/134 (2%)
 Frame = +2

Query: 257 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 436
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 437 ANVIRYFPTQALNFAFKDKYKQVFSAVLTRRRILALLRW*SG--LRWCRRSHLSVLRV-P 607
           ANVIRYFPTQALNFAFKDKYKQVF   + +      LR+  G           S+  V P
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGVDKN--TQFLRYFVGNLASGGAAGATSLCFVYP 135

Query: 608 LDFARTRLAADVGK 649
           LDFARTRLAADVGK
Sbjct: 136 LDFARTRLAADVGK 149



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 MSNLADPVAFAKDFLA 254
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 293 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 451
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 27.1 bits (57), Expect = 0.16
 Identities = 27/136 (19%), Positives = 54/136 (39%)
 Frame = +2

Query: 257 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 436
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 437 ANVIRYFPTQALNFAFKDKYKQVFSAVLTRRRILALLRW*SGLRWCRRSHLSVLRVPLDF 616
            +V      +A  F F D  + +       ++   L+ W  G+     +   ++  P D 
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP---DPKKTPFLISW--GIAQVVTTVAGIVSYPFDT 235

Query: 617 ARTRLAADVGKEMASV 664
            R R+    G+  + +
Sbjct: 236 VRRRMMMQSGRAKSEI 251



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 534 FWRYFXXXXXXXXXXXXTSLCFVYP 608
           F RYF            TSLCFVYP
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYP 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,089
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)