Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00607
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    29   2.9  
12_02_0744 - 22704637-22705341                                         29   3.8  
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737...    27   8.7  

>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 256 PPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSA 149
           PP  PL     T++PP +    FP   RR +   SA
Sbjct: 27  PPPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAASA 62


>12_02_0744 - 22704637-22705341
          Length = 234

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 251 RRAPPGVEPAA*FDSTREISPGPDTGR 331
           RR PP   PA    S+R +SP P +GR
Sbjct: 95  RRRPPRSSPAPTSSSSRGVSPPPTSGR 121


>02_05_0400 +
           28671562-28672219,28672365-28672441,28673679-28673730,
           28673851-28674008
          Length = 314

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 147 SADVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQEWSLRLNLTQHGKYH 311
           ++  TT A  AAS  P +  S    VA   + G  GG +Q+ ++      HG  H
Sbjct: 34  TSTTTTTAAAAASTGPSVATSSSPPVASGGVGGGAGGFYQQAAVAPAANGHGHGH 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,165,382
Number of Sequences: 37544
Number of extensions: 421350
Number of successful extensions: 1099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)