Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00607
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8) 30 1.7
SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0) 28 6.7
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 27 8.9
SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/42 (76%), Positives = 34/42 (80%)
Frame = +1
Query: 7 ENSWIVARETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
E SWI R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 2 EISWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 28 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 28 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 28 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 28 RETSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +1
Query: 34 TSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
T+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 30 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 34 TSAKAFAKGVFINQERKLEVRRRLDT 111
T+AKAFAK VFINQERKLE RRR DT
Sbjct: 3 TTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 9 EFLDRRKRNISESICQRCFHQSRTKV 86
+FLD RK N ESICQ F K+
Sbjct: 3 KFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 9 EFLDRRKRNISESICQRCFHQSRTKV 86
E L RK N ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 9 EFLDRRKRNISESICQRCFHQSRTKV 86
+FLD RK N ESICQ CF K+
Sbjct: 3 KFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RETS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 132
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 9 EFLDRRKRNISESICQRCFHQSRTKV 86
+FLD RK N ESICQ CF K+
Sbjct: 3 KFLDLRKTNYCESICQECFINQERKL 28
>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVRPRTSKGITD
Sbjct: 38 VARVRPRTSKGITD 51
>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVRPRTSKGITD
Sbjct: 136 VARVRPRTSKGITD 149
>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVRPRTSKGITD
Sbjct: 68 VARVRPRTSKGITD 81
>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVRPRTSKGITD
Sbjct: 68 VARVRPRTSKGITD 81
>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVRPRTSKGITD
Sbjct: 68 VARVRPRTSKGITD 81
>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
Length = 86
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VA VRPRTSKGITD
Sbjct: 68 VAHVRPRTSKGITD 81
>SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 570 MPLDVLGRTRAT 605
MPLDVLGRTRAT
Sbjct: 1 MPLDVLGRTRAT 12
>SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 570 MPLDVLGRTRAT 605
MPLDVLGRTRAT
Sbjct: 1 MPLDVLGRTRAT 12
>SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 570 MPLDVLGRTRAT 605
MPLDVLGRTRAT
Sbjct: 1 MPLDVLGRTRAT 12
>SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 570 MPLDVLGRTRAT 605
MPLDVLGRTRAT
Sbjct: 1 MPLDVLGRTRAT 12
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 227 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 135
C+ PG + PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 194 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 105
W+PG CPP C+ +L + TV + +S
Sbjct: 80 WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108
>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 460
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 218 TPPGV-QNLWFPGSCPPSHCSNVGG 147
+P GV +N W PGS S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 49 FAKGVFINQERKLEVRRRLDTALV--LTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGGVW 222
F + + E KL + R L+ L N + S PPT L+ L + ++ PGGV
Sbjct: 358 FRNNRYRSNETKLSIVPRAGRKLLQKLPANRNKSYPPTGLKCKERGLRASVAWFKPGGVD 417
Query: 223 LQS*NLKELTEGTTRSGACG 282
+ + + + R GA G
Sbjct: 418 RCAVRIPSVYRTSIRQGAAG 437
>SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -3
Query: 604 VARVRPRTSKGITD 563
VARVR +TSKGITD
Sbjct: 68 VARVRAKTSKGITD 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,276
Number of Sequences: 59808
Number of extensions: 427830
Number of successful extensions: 932
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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