Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00607
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    28   5.9  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    28   5.9  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   7.9  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   7.9  

>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2045 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2104

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2105 QGAENGEHFKWAL 2117


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210


>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
            ZC101.2c protein.
          Length = 2295

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 1951 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2010

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2011 QGAENGEHFKWAL 2023


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2045 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2104

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2105 QGAENGEHFKWAL 2117


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210


>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
            ZC101.2c protein.
          Length = 2295

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 1951 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2010

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2011 QGAENGEHFKWAL 2023


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2138 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2197

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2198 QGAENGEHFKWAL 2210


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 264 QEWSLRLNLTQHGKYHQARTPEGLTD*QLFLD 359
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
            proteoglycan protein.
          Length = 2481

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +3

Query: 87   RGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKI---------LDSGGSMVAKLKL 239
            + S A  YR +  R   I  SA V   +   A  +PK+         +  G ++V K  +
Sbjct: 2137 KNSYAGEYRCNGYRNNEIIASAAVHVHSSANADDEPKVEIEPPRVRVVSQGDNIVLKCSV 2196

Query: 240  KGIDGGHHQEWSL 278
            +G + G H +W+L
Sbjct: 2197 QGAENGEHFKWAL 2209


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 272 EPAA*FDSTREISPGPDTGRIDRL 343
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  LDRRKRNISESICQRCFHQSRTKVRGS 95
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,370
Number of Sequences: 27780
Number of extensions: 311340
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)