Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00607
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22790.1 68415.m02703 expressed protein ; expression supporte...    31   0.59 
At1g67020.1 68414.m07620 hypothetical protein                          29   2.4  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    29   3.2  
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim...    29   3.2  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    29   3.2  
At3g42120.1 68416.m04325 hypothetical protein                          28   4.2  
At5g56120.1 68418.m07001 expressed protein similar to unknown pr...    28   5.5  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.3  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   9.6  
At2g11620.1 68415.m01249 hypothetical protein                          27   9.6  
At1g48670.1 68414.m05447 auxin-responsive GH3 family protein sim...    27   9.6  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   9.6  

>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 293 SQIKPQAPLLVVPSVNSFKFQLCNHTPPGVQN 198
           S + P +P+     VN FK Q  NH  PG+ N
Sbjct: 23  SSVNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54


>At1g67020.1 68414.m07620 hypothetical protein
          Length = 659

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 159 TTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQEW 272
           ++M +R A   P +LD+  S++ ++++   DG    EW
Sbjct: 86  SSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEW 123


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +1

Query: 100 RLDTALVLT---VNMSSSDPPT-LLQWLGGQLPGNQRFWTPGGVWLQS*NLKELTEGTTR 267
           RL  A +LT      SSS P T  + W  G  P  +   T  G W+Q     ++ EG   
Sbjct: 177 RLFVARLLTFIPARFSSSQPSTDRVVWSIGSKPVAENNKTNSGSWVQKYGTNDMYEGEFH 236

Query: 268 SGAC 279
            G C
Sbjct: 237 RGKC 240


>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 573

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 DVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQ 266
           DV     R A+G+P  + SGG++   ++  G  GG H+
Sbjct: 62  DVKPYIERVANGEPSDVISGGTITRFVQSTGTSGGIHK 99


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 266 LVVPSVNSFKFQLCNHTPPGVQNLWFPGSCPP 171
           LVV         +C   PP  + LWFPGS PP
Sbjct: 45  LVVVRAGKEVSSVCEPLPPD-RPLWFPGSSPP 75


>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -2

Query: 377 CTTTH--RIKKELLICQSFRCPGLVIFPVLSQIKPQAPLLVVPSVNSFKFQLCNHTPPGV 204
           C   H  +++ E LI   FR       PV +   P APLL+ P     ++      PP  
Sbjct: 261 CVDRHPTQVEPEFLIRAGFRVEFTTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDF 320

Query: 203 QN--LWFP 186
            N  L FP
Sbjct: 321 INKSLKFP 328


>At5g56120.1 68418.m07001 expressed protein similar to unknown
           protein (dbj|BAA81760.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 292 VKLSRRLHSWWCPPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*MTYLRLEL 116
           VK +     WW P ++ L+ S   +   ++K+F F +  R      + +R +T   LEL
Sbjct: 117 VKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLEL 175


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 79  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 189
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 402 SLHQLRTSMHHHPPNQERAV 343
           S HQ RT  HHHP N    V
Sbjct: 19  SRHQRRTKSHHHPLNPPNPV 38


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 215 PPGVQNLWFPGSCPPSHCSNVGGS 144
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


>At1g48670.1 68414.m05447 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 525

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 153 DVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGG 257
           DV     R A+G+P  + SGG +   L+  G  GG
Sbjct: 63  DVKPYIERVANGEPSDVISGGPITMFLRSTGTSGG 97


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 405 KSLHQLRTSMHHHPPNQERAVNLSILP 325
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,147
Number of Sequences: 28952
Number of extensions: 298386
Number of successful extensions: 752
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)