Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00606
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 83 2e-16
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 79 2e-15
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 79 3e-15
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294... 78 6e-15
06_01_0978 + 7595641-7595843,7595952-7596072,7596176-7596253,759... 53 2e-07
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 41 8e-04
12_02_0851 + 23668618-23670639 29 3.4
12_02_0751 + 22776979-22777169,22777217-22777496 28 7.9
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KF++LL++A DG+LDL A L V QKRRIYDITNVLEGIGLIEK +K
Sbjct: 169 RYDSSLGLLTKKFINLLKQAPDGILDLNNAAETLEV-QKRRIYDITNVLEGIGLIEKTLK 227
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/61 (63%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAV-RQKRRIYDITNVLEGIGLIEKEV 260
RY+ SLGLLT KF++LL++ +DG+LDL A +L V +KRRIYDITNVLEG GLIEK++
Sbjct: 93 RYDNSLGLLTRKFINLLKQTQDGILDLNDAAKILDVWVRKRRIYDITNVLEGTGLIEKKL 152
Query: 261 K 263
K
Sbjct: 153 K 153
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 KRSKNSIQWRGAGPDYDKNEIGKKVMGLRKQLSYXXXXXXXXXXXXQWIKQSTKNVLDEP 430
K+ KN I+WRG+ D + + L+ ++ I++ + + ++
Sbjct: 150 KKLKNRIRWRGS--DDSGTNLDSDISCLKTEVENLYIQEQALDRSISEIREKMEELTEDE 207
Query: 431 DNQDMCFVMDTEIQ--QCFQNDLVLVLE 508
N FV + +I+ CFQN+ ++ ++
Sbjct: 208 SNHRWLFVTEDDIKGLPCFQNEALIAIK 235
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 79.0 bits (186), Expect = 3e-15
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KF++LL+ A+DG LDL A L V QKRRIYDITNVLEG+ LIEK +K
Sbjct: 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETLEV-QKRRIYDITNVLEGVDLIEKTLK 251
>12_01_0377 -
2939384-2939505,2939629-2939695,2940324-2940543,
2940655-2940731,2940813-2940878,2940970-2941018,
2941131-2941181,2941262-2941314,2941432-2941486,
2941563-2941651,2941742-2941827,2941933-2941989,
2942086-2942275,2943847-2944005
Length = 446
Score = 78.2 bits (184), Expect = 6e-15
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KF++LL+ A G++DL A L V QKRRIYDITNVLEGIGLIEK++K
Sbjct: 130 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETLEV-QKRRIYDITNVLEGIGLIEKKLK 188
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 KRSKNSIQWRGAGPDYDKNEIGKKVMGLRKQLSYXXXXXXXXXXXXQWIKQSTKNVLDEP 430
K+ KN+I+W+G D E+ + L+ + ++ + + ++
Sbjct: 185 KKLKNNIRWKGI-DDSRPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDE 243
Query: 431 DNQDMCFVMDTEIQQ--CFQNDLVLVLE 508
+NQ +V + +I+ CFQN ++ ++
Sbjct: 244 NNQKWLYVTEDDIKSLPCFQNQTLIAIK 271
>06_01_0978 +
7595641-7595843,7595952-7596072,7596176-7596253,
7596371-7596436,7596556-7596688,7596774-7596841,
7596930-7597002,7597097-7597158,7597240-7597633,
7597768-7597832
Length = 420
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/62 (46%), Positives = 38/62 (61%)
Frame = +3
Query: 78 YKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKE 257
Y R +KSLGLL T FV+L + + L A L V ++RRIYDI NVLE IG++ +
Sbjct: 55 YSRKQKSLGLLCTNFVALYDREDVESVGLDDAARRLGV-ERRRIYDIVNVLESIGMLVRR 113
Query: 258 VK 263
K
Sbjct: 114 AK 115
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDL-KIATNLLA-------VRQK-RRIYDITNVLEG 236
R EKSLGLLT FV L + + L + A LL +R K RR+YDI NVL
Sbjct: 203 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEGHAANNMRTKVRRLYDIANVLSS 262
Query: 237 IGLIEK 254
+ LIEK
Sbjct: 263 LNLIEK 268
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLL-----AVRQK-RRIYDITNVLEGIGL 245
R EKSLGLLT FV L + + L A LL A K RR+YDI NVL +
Sbjct: 260 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEGHAENTKVRRLYDIANVLSSLNF 319
Query: 246 IEK 254
I+K
Sbjct: 320 IDK 322
Score = 34.7 bits (76), Expect = 0.069
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 114 TKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVKIAFNG 278
+ FV+L + + L A L V ++RRIYDI NVLE +G+ +++++ G
Sbjct: 93 SSFVALYNRDDVESIGLDDAARRLGV-ERRRIYDIVNVLESVGVSSFFLRLSWTG 146
>12_02_0851 + 23668618-23670639
Length = 673
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 389 QW-IKQSTKNVLDEPDNQDMCFVMDTEIQQCFQNDLVLVLEHHWV 520
QW ++ P N ++ V+ +++ C+ D V+ ++H W+
Sbjct: 605 QWQVRNQRAGFKQLPLNPEIVQVVRNKVKDCYHKDFVIDIDHQWL 649
>12_02_0751 + 22776979-22777169,22777217-22777496
Length = 156
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 479 FQNDLVLVLEHHWVQIYLLEHNQI--RTENQIFYFTLNHQNQWGC 607
F L H ++ YLL Q+ E ++FYF ++ QN W C
Sbjct: 22 FSLSWTLDYNHFFIVDYLLGSPQLCKLQEFELFYFNIDAQNLWIC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,928
Number of Sequences: 37544
Number of extensions: 274337
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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