Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00606
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.      73   1e-13
AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical ...    73   1e-13
AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.      52   5e-07
AL117203-19|CAN86631.1|  358|Caenorhabditis elegans Hypothetical...    52   5e-07
AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical...    52   5e-07
AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical...    52   5e-07
AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical...    52   5e-07
Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    41   0.001
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans farnesylated-...    27   9.3  
AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.
          Length = 342

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 37/60 (61%), Positives = 43/60 (71%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R +KSLGLL  +F+ ++Q +  G  DL  A   L VRQKRRIYDITNVLEGIGLIEK  K
Sbjct: 65  RADKSLGLLAKRFIRMIQYSPYGRCDLNTAAEALNVRQKRRIYDITNVLEGIGLIEKRSK 124


>AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical
           protein Y102A5C.18 protein.
          Length = 342

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 37/60 (61%), Positives = 43/60 (71%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R +KSLGLL  +F+ ++Q +  G  DL  A   L VRQKRRIYDITNVLEGIGLIEK  K
Sbjct: 65  RADKSLGLLAKRFIRMIQYSPYGRCDLNTAAEALNVRQKRRIYDITNVLEGIGLIEKRSK 124


>AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.
          Length = 287

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 39  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 95


>AL117203-19|CAN86631.1|  358|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17d protein.
          Length = 358

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92


>AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17c protein.
          Length = 332

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92


>AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17b protein.
          Length = 284

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92


>AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17a protein.
          Length = 412

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R ++SLGL+T +F+SL Q+ +  VL+L      L +  KRR+YD+ NVLEG+G +EK  K
Sbjct: 36  RSQQSLGLITQRFMSLRQRNE--VLNLNEVAKELNI-SKRRVYDVINVLEGLGYVEKVEK 92


>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVR---QKRRIYDITNVLEGIGLIEK 254
           R EKSLGLL  +F+  + +   G    ++    +A +   +KRRIYDI NV+E +  ++K
Sbjct: 95  RKEKSLGLLCQRFLIAINEETVGSSTREVHLETVARKMNVEKRRIYDIVNVMEALDAMQK 154

Query: 255 EVK--IAFNGEEQVP 293
             K    + G E +P
Sbjct: 155 TNKSYYQWQGLESLP 169



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 201 RRIYDITNVLEGIGLIEKEVKIAFNGEEQVPIMI 302
           RR+YDI NVL  +GLI K+V   F G +++P+ +
Sbjct: 309 RRLYDIANVLVALGLI-KKVHYLF-GTKKIPLFV 340


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 310 FIFIIIGTCSSPLNAIFTSFSIKPIPSKTLVISYILRFCLTANKLVAIFKSKTPSFAFCN 131
           FIF +I  CSSPL  IF S +       T  +S++ +F L  N ++    +K   F  C 
Sbjct: 11  FIFCLIFMCSSPLKKIFYSKT-----CFTHFLSFLFQFFL--NSIIDQL-AKVLKFGNC- 61

Query: 130 NETNLVVSKPKDFSYLLYFKSVIAK 56
            + ++ +     FS  +Y  SV AK
Sbjct: 62  RKFSIFIKSICQFSISIYTSSVWAK 86


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 401 QSTKNVLDEPDNQDMCFVMDTEIQQCFQNDLVLVLEHHWVQIYLLEHNQ 547
           QS    +D+   Q M + +  + Q  FQ +    +EHH   +YL +  Q
Sbjct: 526 QSYNQQMDQHQQQQMIYQLQQQQQIMFQTEDQAQMEHHQQIMYLQQQQQ 574


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 521 APNGVLKLKLDHSENIAG 468
           AP GVL+LK++ SE IAG
Sbjct: 64  APGGVLRLKVNTSEQIAG 81


>Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical
           protein F48F5.5 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 374 IIFHVHPNSLIVFLIPLPFYQFHFYH 297
           ++ HV+  ++ + L P+PF   HF+H
Sbjct: 142 LMAHVYGPTMTILLNPIPFAASHFHH 167


>AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans
           farnesylated-proteins convertingenzyme-2 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 374 IIFHVHPNSLIVFLIPLPFYQFHFYH 297
           ++ HV+  ++ + L P+PF   HF+H
Sbjct: 142 LMAHVYGPTMTILLNPIPFAASHFHH 167


>AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical
           protein C35A11.4 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 350 SLIVFLIPLPFYQFHFYHNRDLLLSIECYFYFFF 249
           +LI+F +   FY+F  +    +L+   C F FFF
Sbjct: 347 NLIIFALMFTFYKFENHVLGFILICFICIFTFFF 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,586
Number of Sequences: 27780
Number of extensions: 289514
Number of successful extensions: 704
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)