Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00606
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 362 VHPNSLIVFLIPLPFYQFHFYHNRDLLLSIECYFYFFFNQT 240
           +H N++I ++    F +F F      +L  + YFY + N+T
Sbjct: 1   MHFNNVIKYI---NFDRFFFIEGMTNVLDFDYYFYDYSNRT 38


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 117  KFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVKIAFNGEEQVPI 296
            +F   L+ A     D+ I +    +  KR I   T  L+G+G +EK       G+E+   
Sbjct: 1195 RFWERLRYAIPSAGDISIESKSSPLVYKRNINTYT--LDGVGSVEKTGVSTLRGQERQRS 1252

Query: 297  MIK 305
            + K
Sbjct: 1253 LFK 1255


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 QLNLFHYYRKQKTVFWI 162
           +LN ++YY ++   +W+
Sbjct: 229 ELNAYYYYMREMLPYWM 245


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 QLNLFHYYRKQKTVFWI 162
           +LN ++YY ++   +W+
Sbjct: 229 ELNAYYYYMREMLPYWM 245


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 521 APNGVLKLKLDHSEN 477
           AP G+L LKL ++EN
Sbjct: 272 APEGLLGLKLINAEN 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,792
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)