Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00605
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 135 4e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 130 2e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 29 0.40
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 26 3.8
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.0
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 8.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 135 bits (327), Expect = 4e-33
Identities = 65/84 (77%), Positives = 70/84 (83%)
Frame = +1
Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
ENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP
Sbjct: 72 ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131
Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
D Q I EAS+VNIPVIALC+TDS
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDS 155
Score = 67.3 bits (157), Expect = 2e-12
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = +2
Query: 71 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEK
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60
Score = 32.3 bits (70), Expect = 0.057
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 488 LCATQTPTKICGHCYPMQHQVFPLYWFMWWLLAREVLRLRG 610
LC T + P+ ++ + W+LLAREVLRLRG
Sbjct: 150 LCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 130 bits (314), Expect = 2e-31
Identities = 61/84 (72%), Positives = 69/84 (82%)
Frame = +1
Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
ENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP
Sbjct: 71 ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130
Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
D Q I EAS+VNIPVIALC+TDS
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDS 154
Score = 67.3 bits (157), Expect = 2e-12
Identities = 25/55 (45%), Positives = 42/55 (76%)
Frame = +2
Query: 59 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 569 MWWLLAREVLRLRGVL 616
+W+LLAREVLR+RG L
Sbjct: 176 IWYLLAREVLRVRGTL 191
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 510 LRFVDIAIPCNTKSSHSIGL 569
L VDIAIP N K SIGL
Sbjct: 156 LNHVDIAIPTNNKGRKSIGL 175
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 29.5 bits (63), Expect = 0.40
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 406 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 507
P L+++L+P ++ EA ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 474 HSCDCFVQHRLPLRFVDIAIPCNT 545
HS D + Q+ +P R +++A C T
Sbjct: 176 HSKDDYAQYMIPFRDINVATSCRT 199
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 456 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 289
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 202 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 53
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 162 MSTNDVLMVPM*STCVVPGKNLFWLLVL 245
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,504
Number of Sequences: 5004
Number of extensions: 58889
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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