Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00605
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 123 1e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 123 1e-28
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 32 0.31
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 3.9
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 3.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.1
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 8.9
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 123 bits (296), Expect = 1e-28
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +1
Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
DHQPI E++ NIP IA C+TDS
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDS 156
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 74 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEK 61
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 507 PLRFVDIAIPCNTKSSHSIG 566
P+R+VDI IP N K SIG
Sbjct: 157 PMRYVDIGIPANNKGKQSIG 176
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 491 CATQTPTKICGHCYPMQHQVFPLYWFMWWLLAREVLRLRGVL 616
C T +P + P ++ ++WLLAR VL++RG +
Sbjct: 152 CDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 123 bits (296), Expect = 1e-28
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +1
Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
DHQPI E++ NIP IA C+TDS
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDS 156
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/61 (54%), Positives = 43/61 (70%)
Frame = +2
Query: 41 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 220
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 221 K 223
K
Sbjct: 61 K 61
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 507 PLRFVDIAIPCNTKSSHSIG 566
P+R+VDI IP N K +SIG
Sbjct: 157 PMRYVDIGIPANNKGRNSIG 176
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 217 GKTCSGCSCCRSHENPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 393
G+ SGC CR E+ D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 394 AFREPRLLIVLD 429
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 141 TFSAPRWVVAASILVTSSSLRASTSNP 61
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 282 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 374
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 148 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 255
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 138 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 25
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,530
Number of Sequences: 37544
Number of extensions: 438466
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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