Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00605
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               158   3e-39
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.98 
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   4.0  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   4.0  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   9.1  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 27   9.1  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  158 bits (384), Expect = 3e-39
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP 
Sbjct: 69  ENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPR 128

Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
            DHQP+TEASYVNIPVIA CNTDS
Sbjct: 129 IDHQPVTEASYVNIPVIAFCNTDS 152



 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 65/190 (34%), Positives = 95/190 (50%), Gaps = 4/190 (2%)
 Frame = +2

Query: 53  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXX 232
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 233 XXXXXXXXXXPL-MC--SSSHHGPSVSVLY*S-LPRTPVLRLLRGVSHQVLLLTRFKLHS 400
                     P  +C  S+  +G    + Y S    TP+       +    +   F+   
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 401 VNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPTKICGHCYPMQHQVFPLYWFMWWL 580
           + +V       H+ +     +++       C T +P +      P  ++       M+WL
Sbjct: 121 LLIVCDPRID-HQPVTEASYVNIPVI--AFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWL 177

Query: 581 LAREVLRLRG 610
           LAREVLR+RG
Sbjct: 178 LAREVLRMRG 187



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +3

Query: 507 PLRFVDIAIPCNTKSSHSIGL 569
           PLR VD+AIPCN K  HSIGL
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGL 173


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 498  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 334
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 498 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 340
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 498 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 340
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 163 CLQTTC*WYPCD-QLASYLGKTCSGCSC 243
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 279  HLITALRSACCTEVCRAHRCYAYCGAF 359
            + + + R +  T++ R HRC  YC  F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,065,715
Number of Sequences: 59808
Number of extensions: 507088
Number of successful extensions: 1211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)